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Marker (SNP): GBS0531


Related with
HY04C22 cDNA clone

Mapping Info
map species chr. mapped as position submitter
Consensus Stein2006 Barley 5 GBS0531 119.8  cm Dr. Nils Stein
Dom x Rec Barley 5 GBS0531 140.1  cm Dr. Nils Stein
Related to Sequence, correspondig to BioObject: HY04C22
 
Sequence: HY04C22u
submitter of sequence: Dr. Wolfgang Michalek
length: 684
priming: 3-prime
EBI-Id: HVUL11031
GenBankAc: AL510189
IPK CR-EST: HY04C22u
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
 
HY04C22u
TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTACTCGGTC AAGGAAATCT GCTGGTTTGA         60
TAAAGAAAGG GCACAATTTG TTACATAGTA AGTATGATAC AAGAGATTTG TTTCAAGAAT        120
TCAACCCAAG GCACAATGAA GGAAGGCTAG CCACTGTGTT TTCTACTCCT GTAGATACAT        180
GTGTAGATAC ATTACAATGG CAAAAGGGGA AAACAGCAAA ACCAAAATGG CACGACGAAT        240
CATCACGAGC GACTGGTCGA ATCCCTTTAA CTGGTACGTG CTAAAACCTA GGAGGGTTCG        300
TCGGGATTCT TGAAACCCCT TGCATTANAT TTGCTTGCCT TTTCCGGTAA TACACAAACG        360
GNCCACTTAC CAGCAACATT CCAGCCATAA GGACCTCGAA ACCAAGAATA GATAGTTTCT        420
CTTCATCCTC CAATGGTACA CAACTCCTGT AAGTAACATA ATGTTTTGGG CCACCTGACG        480
TGGACGTCTC AGCCAACATC TTTCTTTCCT TTGGTTTTGT TCTCTTCCTT TTGTACCATT        540
TTGTACTTGT ACACATTTCA AAGGGCAAAC GGGTAAGCCA AGTTTCCGCC TGCAGCAAGT        600
ACTTCCCAAC AATTCTTCCT CGGGAGTACT GGGGCAAGGG GGAATGCCAA GGGGGCCCGG        660
GANGGGGGGC TGCCAACCCG GGTT                                               684
TypePositionOrientation
ORF 2 - 85: forward
ORF 3 - 281: forward
ORF 179 - 310: forward
ORF 243 - 166: reverse
ORF 682 - 284: reverse
ORF 683 - 561: reverse
ORF 684 - 370: reverse
Cluster Info:
Contig3464.1 (19 members)
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