GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Marker (SNP): GBS0654

Related with

HY05I22

cDNA clone

Mapping Info
map	species	chr.	mapped as	position	submitter
Dom x Rec	Barley	5	GBS0654	61.2 cm	Dr. Nils Stein
Consensus Stein2006	Barley	5	GBS0654	51.5 cm	Dr. Nils Stein

Related to Sequence, correspondig to BioObject: HY05I22

Sequence: HY05I22u

submitter of sequence:	Dr. Wolfgang Michalek
length:	664
priming:	3-prime
EBI-Id:	HVUL11479
GenBankAc:	AL510637
IPK CR-EST:	HY05I22u

HY05I22u
TTTTTTTTTT TTTTTTTTTG ACAAGATTAG AGCAGAATAC TGGCATTTAA GAGGGTGGCA         60
CATCTCCCTT CGTTTTATTT CAAATCCCAA CACAACAGCA TAGCACCCTA CAAACCCGAC        120
TGCAAAAATC CCCCAAAACC ACATCCAGTC GTTGGCTTAT CTCCACTACT TGACATTTGA        180
CACCTACATC TTCCCTTGCC CGTCCGTCAT CACGTCCTTC AAGCCGCCTC CTCAAGCAGC        240
ATCTGATCGA AGTGCCACAC TCCGTGGCCT TTGCCCACTC TTCTCAGCTG CGACACATAC        300
TCAGAGATCT TCTTGATGGC GTCAACCTGC TCCTGAAGGA ATTCACTCTC AACGAAATCG        360
GTCAGCTGAG GATCATTGCA CCTAGTAGCT ACACTGTGCA GGTTGTGCAG TTTTTCATTC        420
ACCAAGCTTT TCAAGAGCTA GAGCCAACTC CATTGCTTTC TCGGGATGGT CGAACTCCGT        480
TAAGGGTGTG ACAATTGACT GGGAGCCTCA CCCTTCCTCC GCGTTTGTTC TGGTACTCCA        540
TGAGCTTCTC CGCGGTGTCC TCTCTCCTCG TCGCTTGATT CCCTTGAAGA ACTTGGCAAA        600
TCCCTTTGAG AGCAAACGTT GTCGCGGTCA AAAGTAAGGC GAAAGAAGGG GAGTGGATAC        660
GCGT                                                                     664

Type	Position	Orientation
ORF	2 - 100:	forward
ORF	144 - 1:	reverse
ORF	176 - 111:	reverse
ORF	662 - 483:	reverse
ORF	664 - 434:	reverse

Cluster Info:
Contig258.2	(32 members)

view Blast Searches

Oryza sativa pep on 09-MAR-07
E-val	simil.	overlap	accno	description
02e-30	91	255	TIGR:LOC_Os12g01530.1	LOC_Os12g01530.1\|11982.m04157\|protein Ferritin 1, chloroplast precursor, putative, expressed
05e-24	89	245	TIGR:LOC_Os11g01530.1	LOC_Os11g01530.1\|11981.m04357\|protein Ferritin 1, chloroplast precursor, putative, expressed
non redundant GenBank CDS translations \+ PDB \+ SwissProt \+ PIR on 09-MAR-07
E-val	simil.	overlap	accno	description
09e-27	81	263	GenBankAc:ABA95615.1	gb\|ABA95615.1\| Ferritin-like domain, putative [Oryza sativa (japonica cultivar-group)]
07e-32	100	256	GenBankAc:AAW68440.1	gb\|AAW68440.1\| ferritin [Triticum aestivum]
06e-29	91	255	GenBankAc:AAM74943.1	gb\|AAM74943.1\| ferritin [Oryza sativa (japonica cultivar-group)] gb\|ABA95613.1\| Ferritin-like domain, putative [Oryza sativa (japonica cultivar-group)]
01e-27	86	254	GenBankAc:P29036	sp\|P29036\|FRI1_MAIZE Ferritin-1, chloroplast precursor (ZmFer1)
04e-25	80	252	GenBankAc:P29390	sp\|P29390\|FRI2_MAIZE Ferritin-2, chloroplast precursor (ZmFer2)
All nt+env_nt+patnt+pdbnt on 31-MAR-10
E-val	simil.	overlap	accno	description
00e1	89.9	636	GenBankAc:EA167185.1	Sequence 31500 from patent US 7214786
00e1	89.6	636	GenBankAc:AY650054.1	Triticum monococcum ferritin (Fer1) mRNA, complete cds
00e1	89.9	633	GenBankAc:EA167188.1	Sequence 31503 from patent US 7214786
00e1	96.3	628	GenBankAc:EF440353.1	Hordeum vulgare ferritin 1 (Fer1) mRNA, complete cds
00e1	90.4	628	GenBankAc:FJ225144.1	Triticum aestivum clone Fer1-1 ferritin 1C mRNA, complete cds
00e1	89.8	628	GenBankAc:FJ225139.1	Triticum aestivum clone KNK1K16 ferritin 1A mRNA, partial cds
00e1	89.5	628	GenBankAc:FJ225137.1	Triticum aestivum clone Fer1-10 ferritin 1A mRNA, complete cds
00e1	90.4	623	GenBankAc:EA167198.1	Sequence 31513 from patent US 7214786
00e1	89.8	619	GenBankAc:AX660707.1	Sequence 1064 from Patent WO03000906
00e1	90.3	609	GenBankAc:FJ225145.1	Triticum aestivum clone KNK1K23 ferritin 1C mRNA, partial cds
00e1	89.6	608	GenBankAc:FJ225141.1	Triticum aestivum clone Fer1-8 ferritin 1B mRNA, partial cds
06e-40	81	432	GenBankAc:NM_001111967.1	Zea mays ferritin homolog2 (fer2), mRNAemb\|X61392.1\| Maize mRNA for ferritin (clone FM2)
01e-37	80.8	432	GenBankAc:BT039753.1	Zea mays full-length cDNA clone ZM_BFc0043C20 mRNA, complete cds
01e-37	80.8	432	GenBankAc:EA167042.1	Sequence 31357 from patent US 7214786
09e-33	80.3	432	GenBankAc:AY106850.1	Zea mays PCO065377 mRNA sequence
09e-33	80.3	432	GenBankAc:GP524768.1	Sequence 11243 from patent US 7572902
01e-151	91.7	424	GenBankAc:FJ225138.1	Triticum aestivum clone F140 ferritin 1A mRNA, partial cds
01e-146	91.7	420	GenBankAc:FJ225142.1	Triticum aestivum clone F97 ferritin 1B mRNA, partial cds
01e-78	85	419	GenBankAc:FP095720.1	Phyllostachys edulis cDNA clone: bphyst039k20, full insert sequence
05e-62	83.3	419	GenBankAc:NM_001072468.1	Oryza sativa (japonica cultivar-group) Os12g0106000 (Os12g0106000) mRNA, complete cds
05e-62	83.3	419	GenBankAc:CT833487.1	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI228J03, full insert sequence
05e-62	83.3	419	GenBankAc:AK102242.1	Oryza sativa Japonica Group cDNA clone:J033088E01, full insert sequence
01e-59	83.1	419	GenBankAc:AF519571.1	Oryza sativa (japonica cultivar-group) ferritin (Fer2) mRNA, complete cds
07e-55	82.6	419	GenBankAc:CT830487.1	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA022H09, full insert sequence
07e-55	82.6	419	GenBankAc:CT830486.1	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA005N05, full insert sequence
01e-53	82.1	419	GenBankAc:AF370029.1	Oryza sativa ferritin mRNA, complete cds
02e-79	85.1	416	GenBankAc:FP091282.1	Phyllostachys edulis cDNA clone: bphyem105f06, full insert sequence
01e-74	84.6	416	GenBankAc:FP092032.1	Phyllostachys edulis cDNA clone: bphylf040c11, full insert sequence
01e-74	84.6	416	GenBankAc:FP095128.1	Phyllostachys edulis cDNA clone: bphylf034p17, full insert sequence
07e-58	82.9	416	GenBankAc:EU960974.1	Zea mays clone 230081 mRNA sequence
07e-58	82.9	416	GenBankAc:BD081909.1	Method of increasing the iron content of plant cells
07e-58	82.9	416	GenBankAc:AX031245.1	Sequence 5 from Patent WO9902687
07e-58	82.9	416	GenBankAc:X61391.1	Maize mRNA for ferritin (clone FM1)
02e-55	82.7	416	GenBankAc:NM_001112093.1	Zea mays ferritin1 (fer1), mRNA
02e-55	82.7	416	GenBankAc:AY106851.2	Zea mays PCO065378 mRNA sequence
02e-55	82.7	416	GenBankAc:BT054073.1	Zea mays full-length cDNA clone ZM_BFc0177J09 mRNA, complete cds
02e-55	82.7	416	GenBankAc:EZ103607.1	TSA: Zea mays contig39264, mRNA sequence
02e-55	82.7	416	GenBankAc:AX660942.1	Sequence 1299 from Patent WO03000906
06e-46	81.7	416	GenBankAc:GP616352.1	Sequence 24356 from patent US 7560542
01e-34	80.3	406	GenBankAc:GP665558.1	Sequence 73562 from patent US 7560542
03e-48	82.2	400	GenBankAc:GP597435.1	Sequence 5439 from patent US 7560542
02e-43	81.6	396	GenBankAc:EU143671.1	Triticum aestivum ferritin (Fer2) mRNA, complete cds
03e-54	82.6	390	GenBankAc:AK251285.1	Hordeum vulgare subsp. vulgare cDNA clone: FLbaf107d05, mRNA sequence
01e-143	93.5	371	GenBankAc:AF415241.1	Hordeum vulgare ferritin mRNA, partial cds
UniProt 15.12 UniRef100 on 28-DEC-09 gave no results
Oryza sativa japonica annotation TIGR 6.1 (cDNA)20091211 on 14-DEC-09 gave no results
UniGeneDec2009.fasta on 14-DEC-09 gave no results

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