GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Marker (RFLP): GBR1421b

Related with

HF15P07

cDNA clone

Mapping Info
map	species	chr.	mapped as	position	submitter
Consensus Stein2006	Barley	5	GBR1421b	45.3 cm	Dr. Nils Stein
Dom x Rec	Barley	5	GBR1421b	54.9 cm	Dr. Nils Stein

Related to Sequence, correspondig to BioObject: HF15P07

Sequence: HF15P07r

submitter of sequence:	Dr. Nils Stein
length:	589
priming:	5-prime
GenBankAc:	BU987855
IPK CR-EST:	HF15P07r

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

HF15P07r
CGGACGAGGA TGCTACTTAA CACGCTCTTG GGTGGGCTTG AGTCAGCTGG AAGAATTGGA         60
GAAGCAGATA AGGTGCTGAA TGAGATGAAG AGAAGGGGCA TTGAGCCCAG CAATCTGACT        120
TATGACATAC TGGTCACAGG ACATGGAAAA CAAAGCAACA AAGTTGAAGC AATGCGGTTG        180
TATTGTGAAA TGGTGGCTAA AGGCTTTCTT CCAAAAGTAA GCACATACAA TGCACTCATA        240
GGTGATTTTG TTAAAGTTGG AATGATGAGT CAAGCTAAAG AGTTGCTCAA TGAAATGAAC        300
AAGAGGGGTG TTCCACCCAC ATCCTGCACT TACGATATTC TTGTGAGTGG ATGGGCAAAG        360
CTTAGAAATG GAACAGAGGT GAGAAAATTG CTCAAAGATA TGAAGGATAA AGGATTTAGT        420
CCATCAAAAG GCACTCTTAG TTCTATATGC AGAGCATTTT CAAAACCAGG AATGACCTGN        480
GAAGCTCGGC GTTTACTTAA AAAGCTGTAT AAGGTTTAGG AGTGCCAAGC ATTGATTCCT        540
CATCTACCAA GCAAGTATAG ATGGTCTGAT TGAGACTGTT CTTAGTATG                    589

Type	Position	Orientation
ORF	1 - 516:	forward
ORF	2 - 76:	forward
ORF	101 - 3:	reverse
ORF	122 - 217:	forward
ORF	144 - 46:	reverse
ORF	239 - 123:	reverse
ORF	589 - 500:	reverse

Singlet Info:
AA tgicl singlet
Representative for Uniset

view Blast Searches

Oryza sativa pep on 09-MAR-07
E-val	simil.	overlap	accno	description
02e-48	80	962	TIGR:LOC_Os02g57800.1	LOC_Os02g57800.1\|11972.m10801\|protein expressed protein
01e-20	32	684	TIGR:LOC_Os01g57410.2	LOC_Os01g57410.2\|11971.m43220\|protein Rf1 protein, mitochondrial precursor, putative, expressed
08e-21	33	512	TIGR:LOC_Os10g21920.1	LOC_Os10g21920.1\|11980.m05202\|protein pentatricopeptide, putative, expressed
03e-22	33	467	TIGR:LOC_Os05g50690.1	LOC_Os05g50690.1\|11975.m09136\|protein pentatricopeptide, putative, expressed
08e-21	40	455	TIGR:LOC_Os04g40130.1	LOC_Os04g40130.1\|11974.m35053\|protein Rf1 protein, mitochondrial precursor, putative, expressed
non redundant GenBank CDS translations \+ PDB \+ SwissProt \+ PIR on 09-MAR-07
E-val	simil.	overlap	accno	description
02e-19	35	974	GenBankAc:NP_568948.1	ref\|NP_568948.1\| unknown protein [Arabidopsis thaliana] dbj\|BAB10161.1\| unnamed protein product [Arabidopsis thaliana]
07e-73	80	933	GenBankAc:XP_468472.1	ref\|XP_468472.1\| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa (japonica cultivar-group)] dbj\|BAD22861.1\| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa (japonica cultivar-group)] dbj\|BAD22929.1\| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa (japonica cultivar-group)]
02e-19	33	729	GenBankAc:NP_921035.1	ref\|NP_921035.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)] gb\|AAM18730.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)] gb\|AAP53322.1\| hypothetical protein LOC_Os10g21920 [Oryza sativa (japonica cultivar-group)]
03e-19	32	684	GenBankAc:NP_916400.1	ref\|NP_916400.1\| B1100D10.28 [Oryza sativa (japonica cultivar-group)] dbj\|BAB92551.1\| putative PPR protein [Oryza sativa (japonica cultivar-group)]
08e-21	33	467	GenBankAc:XP_475959.1	ref\|XP_475959.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)] gb\|AAS16889.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)]
All nt+env_nt+patnt+pdbnt on 31-MAR-10
E-val	simil.	overlap	accno	description
01e-86	83.5	485	GenBankAc:FB885083.1	Sequence 104356 from Patent WO2008034648
01e-86	83.5	485	GenBankAc:HB736276.1	Sequence 85490 from Patent EP2090662
01e-86	83.5	485	GenBankAc:AP004026.3	Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04
01e-86	83.5	485	GenBankAc:AP003989.4	Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06
01e-86	83.5	485	GenBankAc:EA707713.1	Sequence 86592 from patent US 7365185
01e-86	83.5	485	GenBankAc:FB820534.1	Sequence 39807 from Patent WO2008034648
01e-86	83.5	485	GenBankAc:FB857357.1	Sequence 76630 from Patent WO2008034648
01e-86	83.5	485	GenBankAc:FB847780.1	Sequence 67053 from Patent WO2008034648
01e-86	83.5	485	GenBankAc:FB789477.1	Sequence 8750 from Patent WO2008034648
01e-86	83.5	485	GenBankAc:FB827442.1	Sequence 46715 from Patent WO2008034648
01e-86	83.5	485	GenBankAc:HB747876.1	Sequence 97090 from Patent EP2090662
01e-86	83.5	485	GenBankAc:FB877817.1	Sequence 97090 from Patent WO2008034648
01e-86	83.5	485	GenBankAc:FB866217.1	Sequence 85490 from Patent WO2008034648
01e-86	83.5	485	GenBankAc:HB717839.1	Sequence 67053 from Patent EP2090662
01e-86	83.5	485	GenBankAc:HB697501.1	Sequence 46715 from Patent EP2090662
01e-86	83.5	485	GenBankAc:HB690593.1	Sequence 39807 from Patent EP2090662
01e-86	83.5	485	GenBankAc:HB659536.1	Sequence 8750 from Patent EP2090662
01e-86	83.5	485	GenBankAc:HB755142.1	Sequence 104356 from Patent EP2090662
01e-86	83.5	485	GenBankAc:HB727416.1	Sequence 76630 from Patent EP2090662
01e-86	83.5	485	GenBankAc:HB830694.1	Sequence 179908 from Patent EP2090662
01e-59	81.4	472	GenBankAc:XM_002454763.1	Sorghum bicolor hypothetical protein, mRNA
02e-42	81.8	336	GenBankAc:NM_001055107.1	Oryza sativa (japonica cultivar-group) Os02g0824000 (Os02g0824000) mRNA, complete cds
UniProt 15.12 UniRef100 on 28-DEC-09
E-val	simil.	overlap	accno	description
04e-44	50	176	UniProt_UniRef:UniRef100_B9SDG1	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SDG1_RICCO
07e-73	80.7	166	UniProt_UniRef:UniRef100_B8AF54	Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group RepID=B8AF54_ORYSI
02e-72	80.1	166	UniProt_UniRef:UniRef100_Q6K9W7	Pentatricopeptide (PPR) repeat-containing protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q6K9W7_ORYSJ
02e-72	80.1	166	UniProt_UniRef:UniRef100_B9F4K7	Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9F4K7_ORYSJ
03e-66	74.7	166	UniProt_UniRef:UniRef100_C5XWL1	Putative uncharacterized protein Sb04g037860 n=1 Tax=Sorghum bicolor RepID=C5XWL1_SORBI
01e-46	80	115	UniProt_UniRef:UniRef100_Q0DWA2	Os02g0824000 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0DWA2_ORYSJ
Oryza sativa japonica annotation TIGR 6.1 (cDNA)20091211 on 14-DEC-09
E-val	simil.	overlap	accno	description
06e-45	81.8	336	GabiPD:LOC_Os02g57800.1 TIGR:LOC_Os02g57800.1	LOC_Os02g57800.1\|protein PPR repeat containing protein, expressed (TIGR 6.1)
UniGeneDec2009.fasta on 14-DEC-09
E-val	simil.	overlap	accno	description
03e-44	81.8	336	GabiPD:Os.80019 unigene:Os.80019	Os.80019

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