GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Marker (RFLP): GBR1662

Related with

HY01K08

cDNA clone

Mapping Info
map	species	chr.	mapped as	position	submitter
Steptoe x Morex	Barley	6	GBR1662	85.9 cm	Dr. Nils Stein
Consensus Stein2006	Barley	6	GBR1662	87.4 cm	Dr. Nils Stein

Related to Sequence, correspondig to BioObject: HY01K08

Sequence: HY01K08V

submitter of sequence:	Dr. Wolfgang Michalek
length:	605
priming:	5-prime
EBI-Id:	HVUL08126
GenBankAc:	AL507284
IPK CR-EST:	HY01K08V

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

HY01K08V
CGGATCCAAG AGTAGCATCN TCGGTTAGCC GTCGCCACCA CCACCAAGAG GCAACACCGC         60
CATGGCAGTG CGCCCTTCCT CCGTCTCCGT CCGGGCCGGT GCGTCCGTCT CGGCGAAGCT        120
GACCCCTTGG CGGGCCGCGA GGGCTGGGCT CGGTGGCAGG GTCAGCGTCA GCTCGGGCAG        180
GAGGTGCGGC GGCCCCGTGC GGGCGTCGCT CTTCTCGCCC AAGCCTGCGG TGGCCATGGA        240
CGCGCGGCCG AGCAAGGTGC AGGAGCTGCA CGTGTACGAG CTCAACGAGC GCGACCGCGA        300
GAGCCCCGCC TACCTCCGGC TGAGCGCCAA CCAGAGCCAG AACGCGCTCG GCGACCTCGT        360
CCCCTTCACC AACAAGGTGT ACAACGGGAG CCTGGACAAG CGGATCGGGA TCACGGCGGG        420
GATCTGCATC CTGATCCAGC ACGTGCCGGA GCGCAACGGC GACCGCTACG AGGCCATCTA        480
CAGCATGTAC TTCGGCGACT ACGGCCACAT CAGCCTGCAG GGGCCCTACC TCACCTACGA        540
GGAAGTCCTA CCTCGCCGTC ACAGGAGGCT CCGGCGTCTT CGAGGGCGTC TACGGGGCAG        600
GTCAA                                                                    605

Type	Position	Orientation
ORF	3 - 119:	forward
ORF	62 - 604:	forward
ORF	237 - 28:	reverse
ORF	429 - 313:	reverse
ORF	605 - 534:	reverse

Cluster Info:
Contig1053.1	(19 members)

view Blast Searches

Oryza sativa pep on 09-MAR-07
E-val	simil.	overlap	accno	description
03e-54	85	240	TIGR:LOC_Os03g32314.1	LOC_Os03g32314.1\|11973.m08473\|protein Allene oxide cyclase 3, chloroplast precursor, putative, expressed
non redundant GenBank CDS translations \+ PDB \+ SwissProt \+ PIR on 09-MAR-07
E-val	simil.	overlap	accno	description
01e-38	73	252	GenBankAc:CAC83767.1	emb\|CAC83767.1\| allene oxide cyclase [Medicago truncatula]
07e-39	67	252	GenBankAc:BAE45342.1	dbj\|BAE45342.1\| allene oxide cyclase [Pisum sativum]
07e-38	70	250	GenBankAc:CAI29046.1	emb\|CAI29046.1\| allene-oxide cyclase [Medicago truncatula]
06e-53	85	240	GenBankAc:XP_468844.1	ref\|XP_468844.1\| allene oxide cyclase [Oryza sativa (japonica cultivar-group)] gb\|AAR89017.1\| allene oxide cyclase [Oryza sativa (japonica cultivar-group)] emb\|CAD38519.1\| allene oxide cyclase [Oryza sativa (japonica cultivar-group)]
03e-63	85	238	GenBankAc:CAC83766.1	emb\|CAC83766.1\| allene oxide cyclase [Hordeum vulgare subsp. vulgare]
All nt+env_nt+patnt+pdbnt on 31-MAR-10
E-val	simil.	overlap	accno	description
00e1	99.3	605	GenBankAc:AX240746.1	Sequence 11 from Patent WO0157224
00e1	99.3	605	GenBankAc:AJ308488.1	Hordeum vulgare mRNA for allene oxide cyclase (aoc gene)
00e1	99.3	605	GenBankAc:DJ380463.1	Allene oxide cyclase gene and its use in the production of jasmonic acid
00e1	95.8	503	GenBankAc:EA147140.1	Sequence 11455 from patent US 7214786
01e-172	92.9	437	GenBankAc:GP460230.1	Sequence 1651 from patent US 7553954
01e-115	88.3	410	GenBankAc:GP454664.1	Sequence 5616 from patent US 7550578
01e-115	88.3	410	GenBankAc:EU960802.1	Zea mays clone 228746 allene oxide cyclase 4 mRNA, complete cds
01e-115	88.3	410	GenBankAc:DQ246174.1	Zea mays clone 11761 mRNA sequence
01e-115	88.3	410	GenBankAc:NM_001111775.1	Zea mays allene oxide cyclase1 (aoc1), mRNAgb\|AY488136.1\| Zea mays allene oxide cyclase (aoc) mRNA, complete cds
01e-115	88.3	410	GenBankAc:AY103942.1	Zea mays PCO144933 mRNA sequence
01e-115	88.3	410	GenBankAc:BT035006.1	Zea mays full-length cDNA clone ZM_BFb0031J22 mRNA, complete cds
01e-121	89	408	GenBankAc:FP098184.1	Phyllostachys edulis cDNA clone: bphyst019d05, full insert sequence
01e-121	89	408	GenBankAc:FP097052.1	Phyllostachys edulis cDNA clone: bphyem105n18, full insert sequence
01e-114	88.5	401	GenBankAc:BT016725.1	Zea mays clone Contig558 mRNA sequence
01e-102	87.3	401	GenBankAc:NM_001147795.1	Zea mays hypothetical protein LOC100273356 (LOC100273356), mRNAgb\|BT040908.1\| Zea mays full-length cDNA clone ZM_BFc0149J23 mRNA, complete cds
01e-100	87	401	GenBankAc:EU967124.1	Zea mays clone 299605 allene oxide cyclase 4 mRNA, complete cds
01e-123	89.6	396	GenBankAc:EU090802.1	Oryza sativa (japonica cultivar-group) AOC mRNA, complete cds
01e-123	89.6	396	GenBankAc:CT832317.1	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008C16, full insert sequence
01e-123	89.6	396	GenBankAc:NM_001056982.1	Oryza sativa (japonica cultivar-group) Os03g0438100 (Os03g0438100) mRNA, complete cds
01e-123	89.6	396	GenBankAc:AJ493664.1	Oryza sativa mRNA for allene oxide cyclase (aoc gene)
01e-121	89.4	396	GenBankAc:CT841602.1	Oryza rufipogon (W1943) cDNA clone: ORW1943C102N11, full insert sequence
01e-121	89.4	396	GenBankAc:AK071443.1	Oryza sativa Japonica Group cDNA clone:J023091K18, full insert sequence
01e-121	89.4	396	GenBankAc:CT832319.1	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN080L17, full insert sequence
01e-119	89.1	396	GenBankAc:XM_002465042.1	Sorghum bicolor hypothetical protein, mRNA
01e-117	89.1	396	GenBankAc:CT832318.1	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN039M17, full insert sequence
01e-119	89.1	396	GenBankAc:AK060025.1	Oryza sativa Japonica Group cDNA clone:006-303-B07, full insert sequence
01e-129	91.8	353	GenBankAc:EA180745.1	Sequence 45060 from patent US 7214786
01e-87	88.3	316	GenBankAc:GP520110.1	Sequence 6585 from patent US 7572902
UniProt 15.12 UniRef100 on 28-DEC-09
E-val	simil.	overlap	accno	description
08e-68	85.3	143	UniProt_UniRef:UniRef100_Q711R0	Allene oxide cyclase n=1 Tax=Hordeum vulgare RepID=Q711R0_HORVU
01e-55	80	125	UniProt_UniRef:UniRef100_C0HJ49	Putative uncharacterized protein n=1 Tax=Zea mays RepID=C0HJ49_MAIZE
06e-59	88.6	114	UniProt_UniRef:UniRef100_C5WVL6	Putative uncharacterized protein Sb01g031870 n=1 Tax=Sorghum bicolor RepID=C5WVL6_SORBI
03e-58	87.7	114	UniProt_UniRef:UniRef100_B4FUX0	Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FUX0_MAIZE
02e-59	87.7	114	UniProt_UniRef:UniRef100_B6T737	Allene oxide cyclase 4 n=1 Tax=Zea mays RepID=B6T737_MAIZE
02e-59	87.7	114	UniProt_UniRef:UniRef100_Q6RW09	Putative uncharacterized protein n=1 Tax=Zea mays RepID=Q6RW09_MAIZE
03e-58	87.7	114	UniProt_UniRef:UniRef100_B6TQ59	Allene oxide cyclase 4 n=1 Tax=Zea mays RepID=B6TQ59_MAIZE
04e-57	86	114	UniProt_UniRef:UniRef100_Q75KD7	Os03g0438100 protein n=3 Tax=Oryza sativa RepID=Q75KD7_ORYSJ
02e-44	69.3	114	UniProt_UniRef:UniRef100_B9SEJ3	Allene oxide cyclase 3, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SEJ3_RICCO
01e-54	85.3	109	UniProt_UniRef:UniRef100_A3AJG2	Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=A3AJG2_ORYSJ
Oryza sativa japonica annotation TIGR 6.1 (cDNA)20091211 on 14-DEC-09
E-val	simil.	overlap	accno	description
01e-126	89.6	396	GabiPD:LOC_Os03g32314.1 TIGR:LOC_Os03g32314.1	LOC_Os03g32314.1\|protein allene oxide cyclase 4, chloroplast precursor, putative, expressed (TIGR 6.1)
UniGeneDec2009.fasta on 14-DEC-09
E-val	simil.	overlap	accno	description
00e1	99.3	605	GabiPD:Hv.4250 unigene:Hv.4250	Hv.4250
01e-121	89.4	397	GabiPD:Sof.12253 unigene:Sof.12253	Sof.12253
01e-120	89.1	396	GabiPD:Sbi.8574 unigene:Sbi.8574	Sbi.8574

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