GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Marker (RFLP): GBR0163

Related with

HW05E04

cDNA clone

Mapping Info
map	species	chr.	mapped as	position	submitter
Steptoe x Morex	Barley	6	GBR0163	109 cm	Dr. Nils Stein
Consensus Stein2006	Barley	6	GBR0163	110.5 cm	Dr. Nils Stein

Related to Sequence, correspondig to BioObject: HW05E04

Sequence: HW05E04u

submitter of sequence:	Dr. Wolfgang Michalek
length:	536
priming:	3-prime
EBI-Id:	HVUL02594
GenBankAc:	AL501752
IPK CR-EST:	HW05E04u

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

HW05E04u
TTTTTTTTTT TTTTTTTTTA GTGCCAAATT TATATATAGA GGAAAGGATG AGAGCTCCAC         60
GAGACCGAGC AGCAACCACA CCACACCCTG CTTTAGATAC ATCTCAAAGG CTTTCCCTGA        120
CCAAACCAAG TTCTGGAAGC CTACACGAAG AGTTTAGGTT TTTTTTGTTG TTGTTGTTGT        180
TGATTCAGCT ACTAGCTAGC GCATTACTTC CACTTCTTGA ACTTGCCGCC GCCCCCGAAC        240
ATGCCGTGCT TCCCATGCTT GCCGTGCTTG AACTTGCCAT GGCCGTGCTT CCCGTGCTTG        300
AACTTGCCGC CGTGGTGGCC ATACCCACCG CCGTAGCCTC CATGTCCGCC CATCATGCCT        360
CCCATCATGT GTCCGCCTCC ACCGTGCCCG CCGTGAGAGA TCTTGTGTGC TCCGTAAGCG        420
GCGGCAGCAG CTGCTGCGCC TCCAGCTAGC ATGCCGCCCA TGCCGATGCC TCCTCCGTGG        480
CTACCACTGT GACCAGATGA GCNAGGGTAA GCCGGGCAGG GGGGGTATCC ATGCTG            536

Type	Position	Orientation
ORF	2 - 154:	forward
ORF	3 - 446:	forward
ORF	102 - 1:	reverse
ORF	241 - 333:	forward
ORF	343 - 188:	reverse
ORF	535 - 449:	reverse
ORF	536 - 207:	reverse

view Blast Searches

non redundant GenBank CDS translations+PDB+SwissProt+PIR Thu on 23-AUG-05 gave no results
Oryza sativa pep on 09-MAR-07 gave no results
All nt+env_nt+patnt+pdbnt on 31-MAR-10
E-val	simil.	overlap	accno	description
00e1	94.9	490	GenBankAc:AK248168.1	Hordeum vulgare subsp. vulgare cDNA clone: FLbaf104c16, mRNA sequence
00e1	94.9	490	GenBankAc:AK252746.1	Hordeum vulgare subsp. vulgare cDNA clone: FLbaf164c20, mRNA sequence
00e1	94.7	490	GenBankAc:BD341248.1	Newly found single nucleotide polymorphisms (SNPs) on genes and use thereof
00e1	94.4	484	GenBankAc:DD468362.1	Detection instruments using polynucleotide mapped on barley chromosome
00e1	94.6	483	GenBankAc:BD341262.1	Newly found single nucleotide polymorphisms (SNPs) on genes and use thereof
00e1	94.5	477	GenBankAc:BD341263.1	Newly found single nucleotide polymorphisms (SNPs) on genes and use thereof
01e-117	93.1	333	GenBankAc:EA135863.1	Sequence 178 from patent US 7214786
01e-128	93.6	328	GenBankAc:EA135862.1	Sequence 177 from patent US 7214786
01e-127	93.3	327	GenBankAc:AK332530.1	Triticum aestivum cDNA, clone: WT004_D09, cultivar: Chinese Spring
01e-143	95.1	326	GenBankAc:GP695064.1	Sequence 63694 from patent US 7569389
01e-137	94.2	326	GenBankAc:FM990088.1	TSA: Claviceps purpurea mRNA sequence, contig_3265
01e-123	91.7	315	GenBankAc:BD341261.1	Newly found single nucleotide polymorphisms (SNPs) on genes and use thereof
01e-145	99.6	268	GenBankAc:BD341259.1	Newly found single nucleotide polymorphisms (SNPs) on genes and use thereof
UniProt 15.12 UniRef100 on 28-DEC-09 gave no results
Oryza sativa japonica annotation TIGR 6.1 (cDNA)20091211 on 14-DEC-09 gave no results
UniGeneDec2009.fasta on 14-DEC-09
E-val	simil.	overlap	accno	description
00e1	99.7	327	GabiPD:Hv.980 unigene:Hv.980	Hv.980
01e-135	93.8	323	GabiPD:Hv.27033 unigene:Hv.27033	Hv.27033

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