GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Gene: AT1G49240.1

Alternative name:AT1G49240

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	Columbia

Gene function:

ACT8 (ACTIN 8); structural constituent of cytoskeleton (TAIR 7.0)

ACT8 (ACTIN 8); structural constituent of cytoskeleton Member of a subclass of actins composed of ACT2 and ACT8. Its mRNA is strongly expressed in strongly expressed in leaves, roots, stems, flowers, pollen, and siliques. However, protein expression, assayed by a ACT8:GUS fusion reporter, is very low in pollen. Identical to Actin-2 (ACT2) [Arabidopsis Thaliana] (GB:Q96292;GB:Q42056); Identical to Actin-8 (ACT8) [Arabidopsis Thaliana] (GB:Q96293;GB:Q41933;GB:Q9M9C2); similar to ACT2 (ACTIN 2), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G18780.2); similar to ACT11 (ACTIN-11), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G12110.1); similar to ACT7 (actin 7) [Arabidopsis thaliana] (TAIR:AT5G09810.1); similar to actin [Striga asiatica] (GB:AAC49651.1); similar to actin 8 (GB:AAC49523.1); similar to actin [Brassica oleracea] (GB:AAD02328.1); contains InterPro domain Actin; (InterPro:IPR004001); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) (MapMan)

Gene Ontology

GO term	Identifier	Type
structural constituent of cytoskeleton	GO:0005200	molecular function

MapMan Annotation:
BIN 31.1:	cell.organisation
BIN 31:	cell

Related with

MPIZp772G232Q	cDNA clone
MPIZp772O232Q	cDNA clone
MPIZp2000O231Q	cDNA clone
MPIZp768K114Q	cDNA clone
MPIZp770B079Q	cDNA clone
MPIZp772P182Q	cDNA clone
MPIZp769F024Q	cDNA clone
MPIZp768F026Q	cDNA clone
MPIZp2000I033Q	cDNA clone
MPIZp770O072Q	cDNA clone
MPIZp2001G122Q	cDNA clone
MPIZp2001J162Q	cDNA clone
MPMGp2011A13218	cDNA clone
MPIZp770C0101Q	cDNA clone
MPIZp770C011Q	cDNA clone
MPMGp2011I04216	cDNA clone
MPMGp2011E23215	cDNA clone
MPIZp767L1914Q	cDNA clone
MPIZp2001N063Q	cDNA clone
MPIZp2001C094Q	cDNA clone
MPMGp2011P08214	cDNA clone
MPMGp2011D03202	cDNA clone
F3B10T7	cDNA clone
LB_seeds_b5	cDNA clone
E7C1T7	cDNA clone
187A16T7	cDNA clone
231B19T7	cDNA clone
MPMGp2011B22204	cDNA clone
MPMGp2011J05203	cDNA clone
MPMGp2011O21202	cDNA clone
179M16T7	cDNA clone
222G17T7	cDNA clone
97N24T7	cDNA clone
MPIZp768O094Q	cDNA clone
MPIZp772I072Q	cDNA clone
MSU_p955P0919	cDNA clone
MSU_p955K1319	cDNA clone
MSU_p955C2220	cDNA clone
MSU_p955N2411	cDNA clone
MSU_p955D1715	cDNA clone
MSU_p955J1714	cDNA clone
MSU_p955C0427	cDNA clone
MSU_p955D1226	cDNA clone
MSU_p955I0128	cDNA clone
MSU_p955A102	cDNA clone
MSU_p955D137	cDNA clone
MSU_p955O0328	cDNA clone
MPIZp768I067Q	cDNA clone
MPIZp2000J052Q	cDNA clone
311B09	T-DNA Line
MPIZp772A065Q	cDNA clone
501H01	T-DNA Line
822A09	T-DNA Line
480C07	T-DNA Line
311C09	T-DNA Line
726A06	T-DNA Line
480B07	T-DNA Line
822A10	T-DNA Line
498G06	T-DNA Line
338H08	T-DNA Line
MPMGp2011I03216	cDNA clone
MSU_p955A1013	cDNA clone
191O12T7	cDNA clone
MPIZp772O226Q	cDNA clone
91G4T7	cDNA clone
MSU_p955P2230	cDNA clone
MPMGp2011C13215	cDNA clone
260765_at	Affymetrix representative on ATH1-121501
MPIZp1022L1324Q	cDNA clone
MPIZp1022B1322Q	cDNA clone
MPIZp1022L2412Q	cDNA clone
MPIZp1022B035Q	cDNA clone
MPIZp1022J0521Q	cDNA clone
MPIZp1022F1614Q	cDNA clone
MPIZp1022N184Q	cDNA clone
MPIZp1022M0319Q	cDNA clone
MPIZp1022F0811Q	cDNA clone
MPIZp1022E1617Q	cDNA clone
MPIZp1022D2210Q	cDNA clone

External resources

Arabidopsis eFP browser

Sequence: AT1G49240.1

submitter of sequence:	public data
length:	378
description:	amino acid sequence (TAIR 7.0)

AT1G49240.1
MADADDIQPI VCDNGTGMVK AGFAGDDAPR AVFPSVVGRP RHHGVMVGMN QKDAYVGDEA         60
QSKRGILTLK YPIEHGVVSN WDDMEKIWHH TFYNELRIAP EEHPVLLTEA PLNPKANREK        120
MTQIMFETFN SPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG FSLPHAILRL        180
DLAGRDLTDY LMKILTERGY MFTTTAEREI VRDIKEKLSF VAVDYEQEME TSKTSSSIEK        240
NYELPDGQVI TIGAERFRCP EVLFQPSFVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV        300
LSGGTTMFSG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS        360
KAEYDEAGPG IVHRKCF*                                                      378

Sequence: AT1G49240.1

submitter of sequence:	public data
length:	1707
description:	cdna sequence (TAIR 7.0)

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

AT1G49240.1
CCTATATAAA TAGTTCAACA CTCGGTTTAT TTCTTCTCCC CTCTTTGAAT TGCCTCGTCG         60
TCTTCAGCTT CATCGGCCGT TGCATTTCCC GGCGATAAGA GAGAGAAAGA GGAGAAAGAG        120
TGAGCCAGAT CTTCATCGTC GTGGTTCTTG TTTCTTCCTC GATCTCTCGA TCTTCTGCTT        180
TTGCTTTTCC GATTAAGATC GTAGACCATG GCCGATGCTG ATGACATTCA ACCTATTGTC        240
TGTGACAATG GTACTGGAAT GGTTAAGGCT GGATTCGCTG GAGATGATGC TCCCAGAGCG        300
GTTTTCCCCA GTGTTGTTGG TCGACCTAGA CATCATGGTG TCATGGTTGG GATGAATCAG        360
AAAGATGCGT ATGTTGGTGA TGAAGCACAA TCCAAAAGAG GTATCCTCAC ATTGAAATAC        420
CCTATTGAGC ATGGTGTTGT TAGCAACTGG GATGACATGG AGAAGATTTG GCATCACACT        480
TTCTACAATG AGCTCCGTAT TGCTCCTGAA GAGCACCCGG TTCTACTTAC CGAGGCTCCT        540
CTTAACCCAA AAGCCAACAG AGAGAAGATG ACTCAGATCA TGTTTGAGAC CTTTAATTCT        600
CCAGCTATGT ATGTTGCCAT TCAAGCTGTT CTATCACTTT ACGCCAGTGG TCGTACAACC        660
GGTATTGTGT TGGACTCTGG TGATGGTGTG TCTCACACTG TGCCTATCTA CGAGGGTTTC        720
TCACTTCCAC ATGCTATCCT CCGTCTCGAC CTTGCTGGTC GTGACCTTAC TGATTACCTC        780
ATGAAGATCC TTACCGAGAG AGGTTACATG TTCACCACAA CAGCAGAACG GGAAATTGTG        840
AGAGACATCA AGGAGAAGCT TTCCTTTGTC GCTGTCGACT ACGAGCAAGA GATGGAGACC        900
TCGAAAACCA GCTCCTCCAT CGAAAAGAAC TATGAATTAC CCGACGGACA AGTGATCACG        960
ATCGGTGCTG AGAGATTCAG GTGCCCAGAA GTCCTTTTCC AGCCATCATT TGTTGGAATG       1020
GAAGCTGCAG GGATCCACGA GACAACTTAC AACTCGATCA TGAAGTGTGA TGTTGATATC       1080
AGGAAGGACC TTTACGGTAA CATTGTGCTC AGTGGTGGTA CAACTATGTT CTCAGGTATT       1140
GCAGACCGTA TGAGCAAAGA GATCACAGCT CTTGCCCCGA GCAGCATGAA GATTAAGGTC       1200
GTGGCACCAC CCGAGAGGAA GTACAGTGTC TGGATTGGTG GTTCTATCCT TGCTTCCCTC       1260
AGCACTTTCC AGCAGATGTG GATCTCTAAG GCAGAGTATG ATGAAGCAGG TCCAGGCATT       1320
GTCCACAGAA AATGCTTCTA AACTAAAGAG ACATCGTTTC CATGACGGGA TCACATTTCT       1380
TTCTATTTCT CCAATTTGTT TGTTTCAAAT TTTTTTCCCC TTTGTCATTT GTGCACTATG       1440
TGAGAAACTT TCCGGTTACA GCGTTTGGAG AGATGTCTAA GGAGGAGCAG GTTTGAAAAC       1500
CCGCTCTCGC TCTTACCTGA GGCACTAATC CGCGTTTCAA ACTCAGCTTC ATTCTCTATT       1560
CTTGTCCATT TGTTTGTTTG TTTGTAGCCT CTTCAAACTC GGATAAAAAC AAAAGTTTTT       1620
GGACTATTGA TATTTGTACT TTATTTGACA GAATTTCTGT GTTAGGAAGT ATCACAACAA       1680
ATTCGAAAAA TTACCTATTG TTAGCCT                                           1707

Sequence: AT1G49240.1

submitter of sequence:	public data
length:	2442
description:	genomic sequence (TAIR 7.0)

AT1G49240.1
CCTATATAAA TAGTTCAACA CTCGGTTTAT TTCTTCTCCC CTCTTTGAAT TGCCTCGTCG         60
TCTTCAGCTT CATCGGCCGT TGCATTTCCC GGCGATAAGA GAGAGAAAGA GGAGAAAGAG        120
TGAGCCAGAT CTTCATCGTC GTGGTTCTTG TTTCTTCCTC GATCTCTCGA TCTTCTGCTT        180
TTGCTTTTCC GATTAAGGTA ATTAAAACCT CCGATCTACT TGTTCTTGTG TTGGATCTCG        240
ATTACGATTT CTAAGTTACT TCAAAAGTTG TTTCCGATTT GATTTTGATT GGAATTTAGA        300
TCGGTCAAAC TATTGGAAAT TTTTGATCCT GGCTCCGATT AGCTCAACGA TTCATGTTTG        360
ACTTGATCTT GCGTTGTATT TGAAATCGAT CCGGATCCTT TCGCTTCTTC TGTCAATAGG        420
AATCTGAAAT TTGAAATGTT AGTTGAAGTT TGACTTCAGA TTCTGTTGAT TTATTGACTG        480
TAACATTTTG TCTTCCGATG AGTATGGATT CGTTGAAATC TGCTTTCATT ATGATTCTAT        540
TGATAGATAC ATCATACATT GAATTGAATC TACTCATGAA TGAAAAGCCT GGTTTGATTA        600
AGCAAGTGTT TTCGGTTTTC TCGATCAAGA TTCAGATCTT TATGTTTTTG ATTGCAGATC        660
GTAGACCATG GCCGATGCTG ATGACATTCA ACCTATTGTC TGTGACAATG GTACTGGAAT        720
GGTTAAGGTT AGTCTCTTCT TTCTTACTTT AAGGATTCTC TTAATTTTGG CAAGATTTGA        780
TACAAGTTCC TTTGTGCAGG CTGGATTCGC TGGAGATGAT GCTCCCAGAG CGGTTTTCCC        840
CAGTGTTGTT GGTCGACCTA GACATCATGG TGTCATGGTT GGGATGAATC AGAAAGATGC        900
GTATGTTGGT GATGAAGCAC AATCCAAAAG AGGTATCCTC ACATTGAAAT ACCCTATTGA        960
GCATGGTGTT GTTAGCAACT GGGATGACAT GGAGAAGATT TGGCATCACA CTTTCTACAA       1020
TGAGCTCCGT ATTGCTCCTG AAGAGCACCC GGTTCTACTT ACCGAGGCTC CTCTTAACCC       1080
AAAAGCCAAC AGAGAGAAGA TGACTCAGAT CATGTTTGAG ACCTTTAATT CTCCAGCTAT       1140
GTATGTTGCC ATTCAAGCTG TTCTATCACT TTACGCCAGT GGTCGTACAA CCGGTTAGTT       1200
CATTATTAAT GTCGAGAAAA TGAACAAAGT TTTGTTTTCT GTTTTTAATG ATTATGTCAT       1260
ATTGATCACA GTGAAATGAT TTTCTTTAGG TATTGTGTTG GACTCTGGTG ATGGTGTGTC       1320
TCACACTGTG CCTATCTACG AGGGTTTCTC ACTTCCACAT GCTATCCTCC GTCTCGACCT       1380
TGCTGGTCGT GACCTTACTG ATTACCTCAT GAAGATCCTT ACCGAGAGAG GTTACATGTT       1440
CACCACAACA GCAGAACGGG AAATTGTGAG AGACATCAAG GAGAAGCTTT CCTTTGTCGC       1500
TGTCGACTAC GAGCAAGAGA TGGAGACCTC GAAAACCAGC TCCTCCATCG AAAAGAACTA       1560
TGAATTACCC GACGGACAAG TGATCACGAT CGGTGCTGAG AGATTCAGGT GCCCAGAAGT       1620
CCTTTTCCAG CCATCATTTG TTGGAATGGA AGCTGCAGGG ATCCACGAGA CAACTTACAA       1680
CTCGATCATG AAGTGTGATG TTGATATCAG GAAGGACCTT TACGGTAACA TTGTGCTCAG       1740
TGGTGGTACA ACTATGTTCT CAGGTATTGC AGACCGTATG AGCAAAGAGA TCACAGCTCT       1800
TGCCCCGAGC AGCATGAAGA TTAAGGTCGT GGCACCACCC GAGAGGAAGT ACAGTGTCTG       1860
GATTGGTGGT TCTATCCTTG CTTCCCTCAG CACTTTCCAG CAGGTAAAAT TGGACTGTCA       1920
TTTCTAAGTT TTTGCTTCTT GTGGTTGATT AAATGTAGAC AACTCCTCTA ATGGTTTACA       1980
TTTTCTGTGT GTGTGTGTGT GTGTAATCAG ATGTGGATCT CTAAGGCAGA GTATGATGAA       2040
GCAGGTCCAG GCATTGTCCA CAGAAAATGC TTCTAAACTA AAGAGACATC GTTTCCATGA       2100
CGGGATCACA TTTCTTTCTA TTTCTCCAAT TTGTTTGTTT CAAATTTTTT TCCCCTTTGT       2160
CATTTGTGCA CTATGTGAGA AACTTTCCGG TTACAGCGTT TGGAGAGATG TCTAAGGAGG       2220
AGCAGGTTTG AAAACCCGCT CTCGCTCTTA CCTGAGGCAC TAATCCGCGT TTCAAACTCA       2280
GCTTCATTCT CTATTCTTGT CCATTTGTTT GTTTGTTTGT AGCCTCTTCA AACTCGGATA       2340
AAAACAAAAG TTTTTGGACT ATTGATATTT GTACTTTATT TGACAGAATT TCTGTGTTAG       2400
GAAGTATCAC AACAAATTCG AAAAATTACC TATTGTTAGC CT                          2442

Sequence: AT1G49240.1

submitter of sequence:	public data
length:	1134
description:	coding sequence (TAIR 7.0)

AT1G49240.1
ATGGCCGATG CTGATGACAT TCAACCTATT GTCTGTGACA ATGGTACTGG AATGGTTAAG         60
GCTGGATTCG CTGGAGATGA TGCTCCCAGA GCGGTTTTCC CCAGTGTTGT TGGTCGACCT        120
AGACATCATG GTGTCATGGT TGGGATGAAT CAGAAAGATG CGTATGTTGG TGATGAAGCA        180
CAATCCAAAA GAGGTATCCT CACATTGAAA TACCCTATTG AGCATGGTGT TGTTAGCAAC        240
TGGGATGACA TGGAGAAGAT TTGGCATCAC ACTTTCTACA ATGAGCTCCG TATTGCTCCT        300
GAAGAGCACC CGGTTCTACT TACCGAGGCT CCTCTTAACC CAAAAGCCAA CAGAGAGAAG        360
ATGACTCAGA TCATGTTTGA GACCTTTAAT TCTCCAGCTA TGTATGTTGC CATTCAAGCT        420
GTTCTATCAC TTTACGCCAG TGGTCGTACA ACCGGTATTG TGTTGGACTC TGGTGATGGT        480
GTGTCTCACA CTGTGCCTAT CTACGAGGGT TTCTCACTTC CACATGCTAT CCTCCGTCTC        540
GACCTTGCTG GTCGTGACCT TACTGATTAC CTCATGAAGA TCCTTACCGA GAGAGGTTAC        600
ATGTTCACCA CAACAGCAGA ACGGGAAATT GTGAGAGACA TCAAGGAGAA GCTTTCCTTT        660
GTCGCTGTCG ACTACGAGCA AGAGATGGAG ACCTCGAAAA CCAGCTCCTC CATCGAAAAG        720
AACTATGAAT TACCCGACGG ACAAGTGATC ACGATCGGTG CTGAGAGATT CAGGTGCCCA        780
GAAGTCCTTT TCCAGCCATC ATTTGTTGGA ATGGAAGCTG CAGGGATCCA CGAGACAACT        840
TACAACTCGA TCATGAAGTG TGATGTTGAT ATCAGGAAGG ACCTTTACGG TAACATTGTG        900
CTCAGTGGTG GTACAACTAT GTTCTCAGGT ATTGCAGACC GTATGAGCAA AGAGATCACA        960
GCTCTTGCCC CGAGCAGCAT GAAGATTAAG GTCGTGGCAC CACCCGAGAG GAAGTACAGT       1020
GTCTGGATTG GTGGTTCTAT CCTTGCTTCC CTCAGCACTT TCCAGCAGAT GTGGATCTCT       1080
AAGGCAGAGT ATGATGAAGC AGGTCCAGGC ATTGTCCACA GAAAATGCTT CTAA             1134

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