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Gene: AT2G34430.1


  Alternative name:Photosystem II light harvesting complex gene 1.4
  Alternative name:AT2G34430

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
LHB1B1 (Photosystem II light harvesting complex gene 1.4); chlorophyll binding (TAIR 7.0)
LHB1B1 (Photosystem II light harvesting complex gene 1.4); chlorophyll binding Photosystem II type I chlorophyll a/b-binding protein similar to CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G29930.1); similar to Chlorophyll a-b binding protein 1, chloroplast precursor (LHCII type I CAB-1) (LHCP) (GB:P13851); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) (MapMan)

Gene Ontology
GO termIdentifierType
photosynthesis, light harvesting in photosystem IIGO:0009769biological process
plastoglobuleGO:0010287cellular component
photosynthesisGO:0015979biological process
chlorophyll bindingGO:0016168molecular function
chloroplast thylakoid membraneGO:0009535cellular component
thylakoid membraneGO:0042651cellular component
light-harvesting complexGO:0030076cellular component
MapMan Annotation:
BIN  1.1.1.1: PS.lightreaction.photosystem II.LHC-II
BIN  1.1.1: PS.lightreaction.photosystem II
BIN  1.1: PS.lightreaction
BIN  1: PS

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Orthologues and co-orthologues identified by INPARANOID
AT2G34420.1 Arabidopsis thaliana
LOC_Os01g41710.1 Oryza sativa japonica

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
iHOP (AT2G34430)
 
Sequence: AT2G34430.1
submitter of sequence: public data
length: 267
description: amino acid sequence (TAIR 7.0) 
AT2G34430.1
MAASTMALSS PALTGKAVKL SPAASEVFGT GRITMRKASK PTGPSGSPWY GSDRVKYLGP         60
FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI HSRWAMLGAL GCVFPELLAR        120
NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG        180
PLGEAEDLLY PGGSFDPLGL ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL        240
ENLADHLADP VNNNAWAFAT NFVPGK*                                            267
 
Sequence: AT2G34430.1
submitter of sequence: public data
length: 1008
description: cdna sequence (TAIR 7.0)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
 
AT2G34430.1
ATCCAATTTC ATCACATCTT ATTAACTAAA GAGCCTTTTA CTTGCGCCAC ACTCTCACCG         60
CAATGGCCGC CTCGACAATG GCTCTCTCCT CTCCTGCTTT GACCGGAAAG GCCGTTAAGC        120
TATCCCCGGC GGCCTCCGAA GTATTTGGAA CCGGCCGAAT CACCATGCGC AAAGCCTCCA        180
AGCCCACCGG TCCATCCGGC AGCCCATGGT ACGGATCCGA CCGAGTCAAG TACTTGGGTC        240
CATTCTCCGG TGAGCCTCCG AGCTACCTCA CTGGAGAGTT CCCCGGTGAT TACGGGTGGG        300
ACACTGCCGG TCTATCCGCC GATCCCGAGA CCTTCGCTAG GAACCGTGAG CTAGAAGTTA        360
TCCACAGCAG ATGGGCCATG CTCGGAGCCC TAGGCTGCGT TTTCCCTGAG CTATTGGCTA        420
GGAACGGAGT GAAGTTCGGA GAAGCGGTTT GGTTCAAGGC TGGTTCACAG ATCTTCAGCG        480
ACGGAGGATT GGACTACTTG GGCAACCCGA GCTTGGTCCA CGCTCAGAGC ATCTTAGCCA        540
TTTGGGCTAC TCAAGTTATC CTCATGGGAG CTGTTGAGGG CTACAGAGTC GCCGGAGATG        600
GTCCATTGGG AGAAGCAGAG GACTTGCTTT ACCCAGGTGG GAGCTTCGAC CCATTGGGCC        660
TCGCTACTGA CCCCGAGGCT TTCGCGGAGT TGAAGGTGAA GGAGCTCAAG AACGGAAGGT        720
TGGCTATGTT CTCTATGTTT GGATTCTTCG TTCAGGCCAT TGTCACCGGA AAGGGACCGT        780
TGGAGAACCT CGCGGACCAC TTGGCTGATC CAGTCAACAA CAATGCATGG GCCTTCGCTA        840
CCAACTTCGT CCCCGGAAAG TGAGTTTAAT TTGTGATCGA GTTGTGTGTA TCCGGTTTGT        900
TGCATCTTGG AAATGTGATG CAGATTTCAT ATCTTGTAAA TTACTTTGTA TGTGTGTGAA        960
ATATTTAAGA AGCTTTATGA TATTGATGGA TCAGTCACTT ACTATTTA                    1008
SNPleft flanking [allel] right flanking
SNP154728 AAGCCTCCAA[G/G]CCCACCGGTC
SNP325267 GAAAGGGACC[G/G]TTGGAGAACC
SNP154729 CGTTGGAGAA[C/C]CTCGCGGACC
SNP154730 GTTGGAGAAC[C/C]TCGCGGACCA
 
Sequence: AT2G34430.1
submitter of sequence: public data
length: 801
description: coding sequence (TAIR 7.0) 
AT2G34430.1
ATGGCCGCCT CGACAATGGC TCTCTCCTCT CCTGCTTTGA CCGGAAAGGC CGTTAAGCTA         60
TCCCCGGCGG CCTCCGAAGT ATTTGGAACC GGCCGAATCA CCATGCGCAA AGCCTCCAAG        120
CCCACCGGTC CATCCGGCAG CCCATGGTAC GGATCCGACC GAGTCAAGTA CTTGGGTCCA        180
TTCTCCGGTG AGCCTCCGAG CTACCTCACT GGAGAGTTCC CCGGTGATTA CGGGTGGGAC        240
ACTGCCGGTC TATCCGCCGA TCCCGAGACC TTCGCTAGGA ACCGTGAGCT AGAAGTTATC        300
CACAGCAGAT GGGCCATGCT CGGAGCCCTA GGCTGCGTTT TCCCTGAGCT ATTGGCTAGG        360
AACGGAGTGA AGTTCGGAGA AGCGGTTTGG TTCAAGGCTG GTTCACAGAT CTTCAGCGAC        420
GGAGGATTGG ACTACTTGGG CAACCCGAGC TTGGTCCACG CTCAGAGCAT CTTAGCCATT        480
TGGGCTACTC AAGTTATCCT CATGGGAGCT GTTGAGGGCT ACAGAGTCGC CGGAGATGGT        540
CCATTGGGAG AAGCAGAGGA CTTGCTTTAC CCAGGTGGGA GCTTCGACCC ATTGGGCCTC        600
GCTACTGACC CCGAGGCTTT CGCGGAGTTG AAGGTGAAGG AGCTCAAGAA CGGAAGGTTG        660
GCTATGTTCT CTATGTTTGG ATTCTTCGTT CAGGCCATTG TCACCGGAAA GGGACCGTTG        720
GAGAACCTCG CGGACCACTT GGCTGATCCA GTCAACAACA ATGCATGGGC CTTCGCTACC        780
AACTTCGTCC CCGGAAAGTG A                                                  801
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