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Gene: AT2G34420.1


  Alternative name:AT2G34420
  Alternative name:Photosystem II light harvesting complex gene 1.5

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
LHB1B2 (Photosystem II light harvesting complex gene 1.5); chlorophyll binding (TAIR 7.0)
LHB1B2 (Photosystem II light harvesting complex gene 1.5); chlorophyll binding Photosystem II type I chlorophyll a/b-binding protein similar to CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G29930.1); similar to CAB2 (Chlorophyll a/b-binding protein 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G29920.1); similar to CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G29910.1); similar to chloroplast chlorophyll a/b binding protein [Brassica napus] (GB:ABG29728.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) (MapMan)

Gene Ontology
GO termIdentifierType
photosynthesis, light harvesting in photosystem IIGO:0009769biological process
plastoglobuleGO:0010287cellular component
photosynthesisGO:0015979biological process
chlorophyll bindingGO:0016168molecular function
chloroplast thylakoid membraneGO:0009535cellular component
thylakoid membraneGO:0042651cellular component
light-harvesting complexGO:0030076cellular component
MapMan Annotation:
BIN  1.1.1.1: PS.lightreaction.photosystem II.LHC-II
BIN  1.1.1: PS.lightreaction.photosystem II
BIN  1.1: PS.lightreaction
BIN  1: PS

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Orthologues and co-orthologues identified by INPARANOID
LOC_Os01g41710.1 Oryza sativa japonica

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
iHOP (AT2G34420)
 
Sequence: AT2G34420.1
submitter of sequence: public data
length: 266
description: amino acid sequence (TAIR 7.0) 
AT2G34420.1
MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF         60
SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH SRWAMLGALG CVFPELLARN        120
GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP        180
LGEAEDLLYP GGSFDPLGLA TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE        240
NLADHLADPV NNNAWAFATN FVPGK*                                             266
 
Sequence: AT2G34420.1
submitter of sequence: public data
length: 1045
description: cdna sequence (TAIR 7.0)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
 
AT2G34420.1
AATCACTCTC ACCAGTCACA ACCAAAAAAA AGAAAACACA AAAACAAAGA TTATAATGGC         60
TTCCTCAACC ATGGCTTTGT CCTCCCCTGC CTTCGCCGGA AAGGCTGTGA AGCCTGCCGC        120
ATCAGATGTC CTCGGAAGCG GCCGTGTGAC CATGAGGAAG ACTGTCGCCA AGCCAAAGGG        180
TCCATCAGGC AGCCCATGGT ACGGATCTGA CCGAGTCAAG TACTTGGGTC CATTCTCCGG        240
CGAGCCCCCG AGCTACCTTA CCGGTGAGTT CCCCGGTGAC TACGGATGGG ACACCGCTGG        300
TCTATCCGCC GACCCAGAGA CCTTCGCCAG GAACCGTGAG CTAGAAGTTA TCCACAGCAG        360
ATGGGCCATG CTCGGAGCCC TAGGCTGCGT TTTCCCTGAG CTATTGGCTA GGAACGGAGT        420
GAAGTTCGGA GAAGCGGTTT GGTTCAAGGC CGGTTCACAG ATCTTCAGCG ACGGAGGATT        480
GGACTACTTG GGCAACCCGA GCTTGGTCCA CGCTCAGAGC ATCTTAGCCA TTTGGGCTAC        540
TCAAGTTATC CTCATGGGAG CTGTTGAAGG CTACAGAGTC GCCGGAGATG GTCCATTGGG        600
AGAAGCAGAG GACTTGCTTT ACCCAGGTGG CAGCTTCGAC CCATTGGGCC TCGCTACTGA        660
CCCCGAGGCT TTCGCAGAGT TGAAGGTGAA GGAGCTCAAG AACGGAAGGT TGGCTATGTT        720
CTCTATGTTT GGATTCTTCG TTCAAGCCAT CGTCACCGGA AAGGGACCTT TGGAGAACCT        780
CGCCGACCAT TTGGCCGACC CAGTCAACAA CAACGCTTGG GCCTTCGCCA CCAACTTCGT        840
CCCCGGAAAG TGAGCGGCTG CTTATTATGT GAATGAGAGC AGAGAAAGAG AGTTTGTTTG        900
TGGTCTATTC TATGTAAATT TGTGAACTTT CCTTTGTGGT ATCTTTGTAT AGAAATCGAA        960
CCTCTTTTTC TCTAACTGTG TTGGCGTTTT ATCTGAAGAC TCAATTGAAT TGAAATATCC       1020
ACTCTTGTAA AATTCATATG TTCTG                                             1045
SNPleft flanking [allel] right flanking
SNP154727 AGGCTGTGAA[G/G]CCTGCCGCAT
 
Sequence: AT2G34420.1
submitter of sequence: public data
length: 798
description: coding sequence (TAIR 7.0) 
AT2G34420.1
ATGGCTTCCT CAACCATGGC TTTGTCCTCC CCTGCCTTCG CCGGAAAGGC TGTGAAGCCT         60
GCCGCATCAG ATGTCCTCGG AAGCGGCCGT GTGACCATGA GGAAGACTGT CGCCAAGCCA        120
AAGGGTCCAT CAGGCAGCCC ATGGTACGGA TCTGACCGAG TCAAGTACTT GGGTCCATTC        180
TCCGGCGAGC CCCCGAGCTA CCTTACCGGT GAGTTCCCCG GTGACTACGG ATGGGACACC        240
GCTGGTCTAT CCGCCGACCC AGAGACCTTC GCCAGGAACC GTGAGCTAGA AGTTATCCAC        300
AGCAGATGGG CCATGCTCGG AGCCCTAGGC TGCGTTTTCC CTGAGCTATT GGCTAGGAAC        360
GGAGTGAAGT TCGGAGAAGC GGTTTGGTTC AAGGCCGGTT CACAGATCTT CAGCGACGGA        420
GGATTGGACT ACTTGGGCAA CCCGAGCTTG GTCCACGCTC AGAGCATCTT AGCCATTTGG        480
GCTACTCAAG TTATCCTCAT GGGAGCTGTT GAAGGCTACA GAGTCGCCGG AGATGGTCCA        540
TTGGGAGAAG CAGAGGACTT GCTTTACCCA GGTGGCAGCT TCGACCCATT GGGCCTCGCT        600
ACTGACCCCG AGGCTTTCGC AGAGTTGAAG GTGAAGGAGC TCAAGAACGG AAGGTTGGCT        660
ATGTTCTCTA TGTTTGGATT CTTCGTTCAA GCCATCGTCA CCGGAAAGGG ACCTTTGGAG        720
AACCTCGCCG ACCATTTGGC CGACCCAGTC AACAACAACG CTTGGGCCTT CGCCACCAAC        780
TTCGTCCCCG GAAAGTGA                                                      798
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