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Gene: AT3G24830.1


  Alternative name:AT3G24830

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
60S ribosomal protein L13A (RPL13aB) (TAIR 7.0)
60S ribosomal protein L13A (RPL13aB) Identical to 60S ribosomal protein L13a-2 (RPL13AB) [Arabidopsis Thaliana] (GB:Q9LRX8;GB:Q8RXI2); similar to 60S ribosomal protein L13A (RPL13aA) [Arabidopsis thaliana] (TAIR:AT3G07110.1); similar to 60S ribosomal protein L13a-like protein [Solanum tuberosum] (GB:ABA46790.1); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822); contains InterPro domain Ribosomal protein L13, archea and eukaryotic form; (InterPro:IPR005755) (MapMan)

Gene Ontology
GO termIdentifierType
structural constituent of ribosomeGO:0003735molecular function
cytosolic large ribosomal subunitGO:0022625cellular component
translationGO:0006412biological process
cytosolic ribosomeGO:0022626cellular component
large ribosomal subunitGO:0015934cellular component
membraneGO:0016020cellular component
MapMan Annotation:
BIN  29.2.2: protein.synthesis.misc ribososomal protein
BIN  29.2: protein.synthesis
BIN  29: protein

Related with
MPIZp768P115Q cDNA clone
MPIZp2001K124Q cDNA clone
MPIZp2001J194Q cDNA clone
MPMGp2011C04217 cDNA clone
MPMGp2011K07211 cDNA clone
MPMGp2011P24211 cDNA clone
MPIZp767K1210Q cDNA clone
MPMGp2011O04214 cDNA clone
MPMGp2011C12215 cDNA clone
MPMGp2011A13217 cDNA clone
MPMGp2011L10201 cDNA clone
E10H6T7 cDNA clone
MPMGp2011N23206 cDNA clone
199J23T7 cDNA clone
197G2T7 cDNA clone
223L7T7 cDNA clone
MSU_p955D1727 cDNA clone
MSU_p955H0225 cDNA clone
MSU_p955B1215 cDNA clone
MSU_p955G0319 cDNA clone
MSU_p955N0425 cDNA clone
MPIZp769N043Q cDNA clone
MSU_p955E086 cDNA clone
MSU_p955P174 cDNA clone
MPIZp767B1918Q cDNA clone
At1A08 cDNA clone
MPIZp2000A094Q cDNA clone
MPIZp2000A054Q cDNA clone
MSU_p955H0425 cDNA clone
MSU_p955H1615 cDNA clone
MPMGp2011P18217 cDNA clone
MPMGp2011E08205 cDNA clone
MPIZp1022J0121Q cDNA clone
MPIZp1022E172Q cDNA clone
257599_at Affymetrix representative on ATH1-121501
MPIZp1022D198Q cDNA clone
MPIZp1022N237Q cDNA clone
MPIZp1022E2011Q cDNA clone

Orthologues and co-orthologues identified by INPARANOID
AT5G48760.1 Arabidopsis thaliana
AT5G48760.2 Arabidopsis thaliana
LOC_Os03g54890.1 Oryza sativa japonica

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
iHOP (AT3G24830)
 
Sequence: AT3G24830.1
submitter of sequence: public data
length: 207
description: amino acid sequence (TAIR 7.0) 
AT3G24830.1
MVSGSGICSK RVVVDARHHM CGRLASIIAK ELLNGQSVVV VRCEEICLSG GLVRQKMKYM         60
RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG AAALARLKVF EGVPPPYDKV        120
KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKERSQ ALYERKKQLT        180
KLRAKAEKVA EEKLGSQLDV LASIKY*                                            207
 
Sequence: AT3G24830.1
submitter of sequence: public data
length: 920
description: cdna sequence (TAIR 7.0)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
 
AT3G24830.1
ATATATAAAG TCGCCATTGA AGTGAAGCTG AGATCTTTTC GAAGAGCGGA AGCTAAGGAG         60
AGGCGAATTC GAATCGAGAA GATGGTGTCT GGGTCAGGGA TATGTTCAAA GCGTGTCGTT        120
GTTGACGCAC GTCACCATAT GTGTGGTCGT CTTGCTTCGA TCATAGCTAA AGAGTTGCTC        180
AATGGACAGA GTGTTGTTGT TGTCCGATGT GAGGAGATTT GTTTGTCTGG TGGTTTGGTT        240
CGTCAGAAGA TGAAGTACAT GAGGTTTCTT AGGAAACGCA TGAACACTAA ACCTTCTCAT        300
GGTCCTATTC ATTTCCGTGC TCCGTCTAAG ATCTTCTGGC GTACCGTTCG TGGGATGATT        360
CCACACAAGA CCAAGCGTGG TGCTGCTGCT CTTGCACGTT TGAAGGTGTT TGAGGGAGTA        420
CCACCTCCTT ATGACAAGGT CAAGAGAATG GTCATTCCTG ATGCTCTCAA GGTGTTGAGG        480
CTTCAGGCTG GTCACAAGTA CTGCTTGTTG GGACGTTTGT CTTCTGAAGT TGGCTGGAAC        540
CATTACGATA CCATCAAGGA GCTTGAGGTG AAGAGAAAGG AGAGGTCACA AGCTTTGTAT        600
GAGCGTAAGA AGCAACTCAC CAAGCTCAGG GCAAAGGCCG AGAAGGTTGC AGAGGAGAAA        660
CTTGGATCCC AGCTCGATGT TCTTGCATCG ATCAAGTACT GAAGAAAATC AGCATCTATC        720
TTTTGGTTTA ACTCTTGTTT TGGTTTTTAT CTATTCAGAT TTTGTTTTCT TCCTTGTATC        780
ACTGTTGAAG TTTATCACCT CATTTCAGTT TTATTTATCA GTTGATACTT CAATCCTTAG        840
GGATGAGTTC TATAACTTCT AAGCGTCCCA ATTATGTTAA TCTTCTACAA ATATTCTTCA        900
ATCCAAATTC ACTATATGGC                                                    920
SNPleft flanking [allel] right flanking
SNP330468 GCATGAACAC[T/T]AAACCTTCTC
SNP198337 GTTTGAAGGT[G/G]TTTGAGGGAG
SNP198338 TTGAGGGAGT[A/A]CCACCTCCTT
SNP198339 AGGTCAAGAG[A/A]ATGGTCATTC
SNP198340 GACGTTTGTC[T/T]TCTGAAGTTG
 
Sequence: AT3G24830.1
submitter of sequence: public data
length: 1558
description: genomic sequence (TAIR 7.0) 
AT3G24830.1
ATATATAAAG TCGCCATTGA AGTGAAGCTG AGATCTTTTC GAAGAGCGGA AGCTAAGGAG         60
AGGCGAATTC GAATCGAGAA GATGGTGTCT GGGTCAGGGA TATGTTCAAA GCGTGTCGTT        120
GTTGACGCAC GTCACCATAT GTGTGGTCGT CTTGCTTCGA TCATAGCTAA AGAGTTGCTC        180
AATGGACAGA GTGTTGTTGT TGTCCGATGT GAGGAGATTT GTTTGTCTGG TGGTTTGGTT        240
CGTCAGAAGA TGAAGTACAT GAGGTTTCTT AGGAAACGCA TGAACACTAA ACCTTCTCAT        300
GGTCCTATTC ATTTCCGTGC TCCGTCTAAG ATCTTCTGGC GTACCGTTCG TGGGTTCGTA        360
TTCTAATCTC ACAGTCTTAA AGTTCTTAGC TTAGTATGTG ATTCTTGAAA ATGAAGATTA        420
GAATTTGAGT ATTGGGTTTT TGGAAAGTTG TTATATTTTG TGTAGCTTGT TAGGGTTTGC        480
ATCAATGGAT GGATTTGTGT TTAGGTTGGT TAGTTACTAT TAAGTATGAA GAAATGGTCA        540
GCTTTTGATC TTTGTGCAAT GATGTCTGTG TTAGGAATTG TATGTTTGAT AGTGTGATGG        600
AGGATTTGAA ATGTGATCAT TTGTCATTTA CAGGATGATT CCACACAAGA CCAAGCGTGG        660
TGCTGCTGCT CTTGCACGTT TGAAGGTGTT TGAGGGAGTA CCACCTCCTT ATGACAAGGT        720
CAAGAGAATG GTCATTCCTG ATGCTCTCAA GTAATGTTTC TGCAACTTTG TTCTATCTTG        780
TAATTTTGGT TATGTTCAAT GTGTTTTAGC TGTCAACTGG TTTTCGTTTG TTTTGTTTTG        840
TTTAGGGTGT TGAGGCTTCA GGCTGGTCAC AAGTACTGCT TGTTGGGACG TTTGTCTTCT        900
GAAGTTGGCT GGAACCATTA CGATACCATC AAGGTATGTC CCTTTTGTCC TTTTCGTCTG        960
CCTTATTATT GGAACAAAAG GTGCTTCATT TACTAAAATT GTATTTGTAA GTTTCCTATG       1020
AGTTGATTTG AATAGCATCT ACTGACACAT CTTTGTCATT GTTCTGGGTC TTTTGCTGAT       1080
TGTTTTAATT TATAACTGAA GATCATATCA TTGTACTTAG TTTAGTCAGG AGAAAATTAT       1140
CTCACTTAAT CTGTGGAAGA AACTGGGAAT TTACTGTTGG TTTAATGATT TTACAGGAGC       1200
TTGAGGTGAA GAGAAAGGAG AGGTCACAAG CTTTGTATGA GCGTAAGAAG CAACTCACCA       1260
AGCTCAGGGC AAAGGCCGAG AAGGTTGCAG AGGAGAAACT TGGATCCCAG CTCGATGTTC       1320
TTGCATCGAT CAAGTACTGA AGAAAATCAG CATCTATCTT TTGGTTTAAC TCTTGTTTTG       1380
GTTTTTATCT ATTCAGATTT TGTTTTCTTC CTTGTATCAC TGTTGAAGTT TATCACCTCA       1440
TTTCAGTTTT ATTTATCAGT TGATACTTCA ATCCTTAGGG ATGAGTTCTA TAACTTCTAA       1500
GCGTCCCAAT TATGTTAATC TTCTACAAAT ATTCTTCAAT CCAAATTCAC TATATGGC         1558
 
Sequence: AT3G24830.1
submitter of sequence: public data
length: 621
description: coding sequence (TAIR 7.0) 
AT3G24830.1
ATGGTGTCTG GGTCAGGGAT ATGTTCAAAG CGTGTCGTTG TTGACGCACG TCACCATATG         60
TGTGGTCGTC TTGCTTCGAT CATAGCTAAA GAGTTGCTCA ATGGACAGAG TGTTGTTGTT        120
GTCCGATGTG AGGAGATTTG TTTGTCTGGT GGTTTGGTTC GTCAGAAGAT GAAGTACATG        180
AGGTTTCTTA GGAAACGCAT GAACACTAAA CCTTCTCATG GTCCTATTCA TTTCCGTGCT        240
CCGTCTAAGA TCTTCTGGCG TACCGTTCGT GGGATGATTC CACACAAGAC CAAGCGTGGT        300
GCTGCTGCTC TTGCACGTTT GAAGGTGTTT GAGGGAGTAC CACCTCCTTA TGACAAGGTC        360
AAGAGAATGG TCATTCCTGA TGCTCTCAAG GTGTTGAGGC TTCAGGCTGG TCACAAGTAC        420
TGCTTGTTGG GACGTTTGTC TTCTGAAGTT GGCTGGAACC ATTACGATAC CATCAAGGAG        480
CTTGAGGTGA AGAGAAAGGA GAGGTCACAA GCTTTGTATG AGCGTAAGAA GCAACTCACC        540
AAGCTCAGGG CAAAGGCCGA GAAGGTTGCA GAGGAGAAAC TTGGATCCCA GCTCGATGTT        600
CTTGCATCGA TCAAGTACTG A                                                  621
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