GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Gene: AT3G56800.1

Alternative name:AT3G56800

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	Columbia

Gene function:

CAM3 (CALMODULIN 3); calcium ion binding (TAIR 7.0)

CAM3 (CALMODULIN 3); calcium ion binding encodes a calmodulin Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [Arabidopsis Thaliana] (GB:Q03509); Identical to Calmodulin-2/3/5 (CaM-2/3/5) (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to ATCAL4 (calmodulin-related protein 4), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G41110.1); similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to calmodulin 4 [Daucus carota] (GB:AAQ63461.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) (MapMan)

Gene Ontology

GO term	Identifier	Type
calcium ion binding	GO:0005509	molecular function
calcium-mediated signaling	GO:0019722	biological process

MapMan Annotation:
BIN 30.3:	signalling.calcium
BIN 30:	signalling

Related with

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MPIZp768G072Q	cDNA clone
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MPIZp767L0819Q	cDNA clone
MPIZp767M0214Q	cDNA clone
MPIZp2000I051Q	cDNA clone
LB_AraFloC7w	cDNA clone
MPMGp2011B17216	cDNA clone
MPIZp2001D051Q	cDNA clone
MPMGp2011I04218	cDNA clone
MPMGp2011H02203	cDNA clone
MSU_p955M0616	cDNA clone
MSU_p955P1217	cDNA clone
MSU_p955G0827	cDNA clone
MPIZp767J1519Q	cDNA clone
At1A10	cDNA clone
MPIZp768B128Q	cDNA clone
LB_Hor1_H8	cDNA clone
MPIZp2000L034Q	cDNA clone
MPIZp770I193Q	cDNA clone
MPIZp767M0618Q	cDNA clone
665B04	T-DNA Line
MPIZp2001C144Q	cDNA clone
MSU_p955P1222	cDNA clone
MSU_p955E1818	cDNA clone
MSU_p955A1814	cDNA clone
MSU_p955M1615	cDNA clone
MSU_p955D2420	cDNA clone
MPMGp2011E15215	cDNA clone
LB_:Hor2_G12	cDNA clone
MPIZp770J203Q	cDNA clone
MSU_p955L0628	cDNA clone
MPIZp2000G232Q	cDNA clone
MSU_p955J2019	cDNA clone
MSU_p955D2323	cDNA clone
MPIZp2001O173Q	cDNA clone
MPIZp771C142Q	cDNA clone
501G03	T-DNA Line
MPIZp768K097Q	cDNA clone
MSU_p955L0116	cDNA clone
246290_at	Affymetrix representative on ATH1-121501
MPIZp1022I0624Q	cDNA clone
MPIZp1022H2417Q	cDNA clone
MPIZp1022M0117Q	cDNA clone
MPIZp1022J077Q	cDNA clone
MPIZp1022I124Q	cDNA clone
MPIZp1022A1719Q	cDNA clone
MPIZp1022K1016Q	cDNA clone
MPIZp1022G2015Q	cDNA clone
MPIZp1022A1821Q	cDNA clone
MPIZp1022H238Q	cDNA clone
MPIZp1022J1812Q	cDNA clone
MPIZp1022B0324Q	cDNA clone
MPIZp1022A158Q	cDNA clone
MPIZp1022L1710Q	cDNA clone

In vitro kinase assay on protein microarray

The recombinant protein expressed by this clone is an in vitro substrate for the protein kinase(s):

AT4G01370.1

Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804

External resources

Arabidopsis eFP browser

Sequence: AT3G56800.1

submitter of sequence:	public data
length:	150
description:	amino acid sequence (TAIR 7.0)

AT3G56800.1
MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG         60
NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF ISAAELRHVM TNLGEKLTDE        120
EVDEMIKEAD VDGDGQINYE EFVKVMMAK*                                         150

Sequence: AT3G56800.1

submitter of sequence:	public data
length:	927
description:	cdna sequence (TAIR 7.0)

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

AT3G56800.1
GTTAATAGCT TCGTACCCGA TAAATACGGT TGCTCTCTCG TTTTTTCCAG CAGAGACACT         60
TTTTCTAATT TTCTCTTCTT CTTCTTCTTT CTCGTTTTGA GAGAAAACAA AAAAATTCTG        120
AATCTACAGG TTTCACGAAA AGGAGAAGAA AAAAACAATG GCGGATCAGC TCACCGACGA        180
TCAGATCTCT GAGTTTAAGG AAGCTTTCAG CTTATTCGAC AAGGATGGTG ATGGTTGCAT        240
TACCACCAAG GAGCTGGGTA CTGTGATGCG TTCCCTTGGA CAAAACCCAA CCGAAGCAGA        300
GCTTCAAGAC ATGATCAACG AAGTGGATGC TGATGGTAAC GGTACCATTG ATTTCCCAGA        360
GTTCTTGAAC CTTATGGCTC GTAAGATGAA GGACACCGAC TCTGAGGAAG AGCTCAAGGA        420
AGCATTCCGG GTTTTCGACA AGGACCAGAA CGGTTTCATC TCAGCAGCTG AGCTCCGCCA        480
TGTGATGACA AACCTTGGTG AGAAGCTTAC TGATGAAGAA GTTGATGAGA TGATCAAGGA        540
AGCTGATGTT GATGGTGATG GTCAGATTAA CTACGAAGAG TTTGTTAAGG TCATGATGGC        600
TAAGTGATGC TGTTTTAGAA CCAAACAATG GCTCTATAAA CTTGGTTTGC ATCTCTTACA        660
TATAAATTCT TATGTTATGT TCTATAATTT TTATTCATGG GACTCGAGGT ATGTTTTCTG        720
CTTGTTTAAG ACGCGAATGT TTTATCCCTT TTATGCTCTA TTTTGCGTCT GAACATTTTC        780
AAAAGTCTTG TTTTTTTGTT GTCTTGCTCC TGTAATTTGT AACCTTGGTC TAGTTCGCGG        840
TTTTTTATTA ATGGTGTCTC TCTAGTAAAG CATTGTATCA TGGTTTTGTG AAATGCAAAT        900
TAGGTCCTAT CAATGACTAA AAAGGTC                                            927

	SNP	left flanking [allel] right flanking
	SNP117420	CCAAGGAGCT[G/G]GGTACTGTGA
	SNP337596	TCAACGAAGT[G/G]GATGCTGATG
	SNP117419	TCAAGGAAGC[A/A]TTCCGGGTTT
	SNP337595	AGATGATCAA[G/G]GAAGCTGATG

Sequence: AT3G56800.1

submitter of sequence:	public data
length:	1417
description:	genomic sequence (TAIR 7.0)

AT3G56800.1
GTTAATAGCT TCGTACCCGA TAAATACGGT TGCTCTCTCG TTTTTTCCAG CAGAGACACT         60
TTTTCTAATT TTCTCTTCTT CTTCTTCTTT CTCGTTTTGA GAGAAAACAA AAAAATTCTG        120
AATCTACAGG TTTCACGAAA AGGAGAAGAA AAAAACAATG GCGGATCAGC TCACCGACGA        180
TCAGATCTCT GAGTTTAAGG AAGCTTTCAG CTTATTCGAC AAGGATGGTG ATGGTACGTT        240
GTTGTTTTTT TCTCTCTCCC TCTCGCAATT TCAAATGTTT TTGAATACAT AGGATTTTGC        300
TACTGTTGGA TCTTGGTGTC TAGCCATAAC TGATTTGATT TCTGTTCTTC TTGTTGATTC        360
AATTGATCTG TGTCGATGTA GATAATTAAC GGATCTGTAA TTCGTGATCT CTAGACTCGT        420
TCCTTGTTTT TCAATTTTTG TTCGTTTGTT TCCTGGATTG GATTTGAATC GAAATTTGGA        480
TGATTGATGA CTTGGAGATT TGCCAATTTG TTATCGATTT GGATTTAATT TTCCATCTGA        540
ATTATTTTAT CTCACTTTAG ATTTGAGAAG TTAATGACTA GAAACTGTTA ATTGAGAAGT        600
TTGGGATCTA GCTAAAATGC TTCTCTACAG AGAAACCTGC TTTGAGTTTC GTAATTGAAG        660
ATATTTGATT GAATTAGATT TACAGAGAAG TGAATGATGA ACAAATTCTT GATTTGCTTG        720
TAGGTTGCAT TACCACCAAG GAGCTGGGTA CTGTGATGCG TTCCCTTGGA CAAAACCCAA        780
CCGAAGCAGA GCTTCAAGAC ATGATCAACG AAGTGGATGC TGATGGTAAC GGTACCATTG        840
ATTTCCCAGA GTTCTTGAAC CTTATGGCTC GTAAGATGAA GGACACCGAC TCTGAGGAAG        900
AGCTCAAGGA AGCATTCCGG GTTTTCGACA AGGACCAGAA CGGTTTCATC TCAGCAGCTG        960
AGCTCCGCCA TGTGATGACA AACCTTGGTG AGAAGCTTAC TGATGAAGAA GTTGATGAGA       1020
TGATCAAGGA AGCTGATGTT GATGGTGATG GTCAGATTAA CTACGAAGAG TTTGTTAAGG       1080
TCATGATGGC TAAGTGATGC TGTTTTAGAA CCAAACAATG GCTCTATAAA CTTGGTTTGC       1140
ATCTCTTACA TATAAATTCT TATGTTATGT TCTATAATTT TTATTCATGG GACTCGAGGT       1200
ATGTTTTCTG CTTGTTTAAG ACGCGAATGT TTTATCCCTT TTATGCTCTA TTTTGCGTCT       1260
GAACATTTTC AAAAGTCTTG TTTTTTTGTT GTCTTGCTCC TGTAATTTGT AACCTTGGTC       1320
TAGTTCGCGG TTTTTTATTA ATGGTGTCTC TCTAGTAAAG CATTGTATCA TGGTTTTGTG       1380
AAATGCAAAT TAGGTCCTAT CAATGACTAA AAAGGTC                                1417

Sequence: AT3G56800.1

submitter of sequence:	public data
length:	450
description:	coding sequence (TAIR 7.0)

AT3G56800.1
ATGGCGGATC AGCTCACCGA CGATCAGATC TCTGAGTTTA AGGAAGCTTT CAGCTTATTC         60
GACAAGGATG GTGATGGTTG CATTACCACC AAGGAGCTGG GTACTGTGAT GCGTTCCCTT        120
GGACAAAACC CAACCGAAGC AGAGCTTCAA GACATGATCA ACGAAGTGGA TGCTGATGGT        180
AACGGTACCA TTGATTTCCC AGAGTTCTTG AACCTTATGG CTCGTAAGAT GAAGGACACC        240
GACTCTGAGG AAGAGCTCAA GGAAGCATTC CGGGTTTTCG ACAAGGACCA GAACGGTTTC        300
ATCTCAGCAG CTGAGCTCCG CCATGTGATG ACAAACCTTG GTGAGAAGCT TACTGATGAA        360
GAAGTTGATG AGATGATCAA GGAAGCTGAT GTTGATGGTG ATGGTCAGAT TAACTACGAA        420
GAGTTTGTTA AGGTCATGAT GGCTAAGTGA                                         450

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