GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Gene: AT4G13170.1

Alternative name:AT4G13170

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	Columbia

Gene function:

60S ribosomal protein L13A (RPL13aC) (TAIR 7.0)

60S ribosomal protein L13A (RPL13aC) Identical to 60S ribosomal protein L13a-3 (RPL13AC) [Arabidopsis Thaliana] (GB:Q9SVR0); similar to 60S ribosomal protein L13A (RPL13aD) [Arabidopsis thaliana] (TAIR:AT5G48760.2); similar to 60S ribosomal protein L13a-like protein [Solanum tuberosum] (GB:ABA46790.1); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822); contains InterPro domain Ribosomal protein L13, archea and eukaryotic form; (InterPro:IPR005755) (MapMan)

Gene Ontology

GO term	Identifier	Type
structural constituent of ribosome	GO:0003735	molecular function
cytosolic large ribosomal subunit	GO:0022625	cellular component
translation	GO:0006412	biological process
ribosome	GO:0005840	cellular component
membrane	GO:0016020	cellular component

MapMan Annotation:
BIN 29.2.2:	protein.synthesis.misc ribososomal protein
BIN 29.2:	protein.synthesis
BIN 29:	protein

Related with

MPIZp768P115Q	cDNA clone
MPIZp2001K124Q	cDNA clone
MPMGp2011P18217	cDNA clone
MPMGp2011C04217	cDNA clone
MPMGp2011K07211	cDNA clone
MPMGp2011P24211	cDNA clone
MPIZp767K1210Q	cDNA clone
MPMGp2011C12215	cDNA clone
MPMGp2011L10201	cDNA clone
E10H6T7	cDNA clone
MPMGp2011N23206	cDNA clone
197G2T7	cDNA clone
223L7T7	cDNA clone
MSU_p955H0225	cDNA clone
MSU_p955B1215	cDNA clone
MSU_p955G0319	cDNA clone
MPIZp769N043Q	cDNA clone
MPIZp767B1918Q	cDNA clone
At1A08	cDNA clone
MPIZp2000A094Q	cDNA clone
531B09	T-DNA Line
373A12	T-DNA Line
MPIZp2001J194Q	cDNA clone
MPIZp2000A054Q	cDNA clone
MPMGp2011O04214	cDNA clone
MPMGp2011E08205	cDNA clone
MSU_p955H0425	cDNA clone
MSU_p955P174	cDNA clone
MPIZp1022J0121Q	cDNA clone
MPIZp1022E172Q	cDNA clone
254763_at	Affymetrix representative on ATH1-121501
MPIZp1022D198Q	cDNA clone
MPIZp1022N237Q	cDNA clone
MPIZp1022E2011Q	cDNA clone

Orthologues and co-orthologues identified by INPARANOID

AT5G48760.1	Arabidopsis thaliana
AT5G48760.2	Arabidopsis thaliana
LOC_Os03g54890.1	Oryza sativa japonica

External resources

Arabidopsis eFP browser

Sequence: AT4G13170.1

submitter of sequence:	public data
length:	207
description:	amino acid sequence (TAIR 7.0)

AT4G13170.1
MVSGSGICAK RVVVDGRHHM LGRLASNTAK ELLNGQEVVV VRCEEICLSG GLVRQKMKYM         60
RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG AAALARLKVF EGIPPPYDKI        120
KRMVIPDALK VLRLQSGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERSQ VMYERKKQLN        180
KLRTKAEKVA EERLGSQLDV LAPVKY*                                            207

Sequence: AT4G13170.1

submitter of sequence:	public data
length:	862
description:	cdna sequence (TAIR 7.0)

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

AT4G13170.1
ATGATAATCT ACTTTTTCAG AGCCGAAGCA AGGGAAGAAG AAGAAGAAGA AGATGGTGTC         60
TGGGTCAGGG ATATGCGCGA AGCGCGTTGT CGTCGACGGG CGACACCACA TGCTTGGTCG        120
TCTAGCTTCC AACACTGCGA AGGAGTTACT TAACGGACAG GAAGTGGTTG TTGTCCGATG        180
TGAAGAGATT TGTCTCTCGG GAGGTTTGGT TCGACAAAAG ATGAAGTACA TGAGATTCCT        240
TAGGAAACGT ATGAACACTA AGCCTTCTCA TGGTCCTATT CACTTTCGTG CTCCTTCCAA        300
GATCTTCTGG CGCACTGTTC GCGGGATGAT TCCACACAAG ACCAAGCGTG GTGCTGCTGC        360
ACTTGCTCGC TTGAAGGTTT TTGAGGGAAT CCCACCTCCT TACGACAAGA TTAAGAGAAT        420
GGTTATTCCT GATGCTCTTA AGGTTTTGAG ACTTCAGAGT GGTCACAAGT ACTGCTTATT        480
GGGACGTTTA TCTTCTGAGG TTGGCTGGAA CCATTATGAT ACCATTAAAG AACTTGAGAC        540
AAAGAGAAAG GAAAGATCAC AAGTGATGTA TGAGCGTAAG AAGCAACTCA ACAAGCTCAG        600
GACCAAGGCA GAGAAGGTTG CGGAAGAGAG GCTCGGATCA CAGCTAGATG TTCTTGCCCC        660
GGTCAAGTAT TGAAGAAAAC CGACGTCTAT CACCTCAGAG TTTTACACCC GTTTGGTTGA        720
AGCTTGTTTT GATTTTGATT TTGCATCTGA AATTTGGTTT TGTTAGTGTC AAAGTGAGAA        780
TTCTCTCTTC TCATTTACTC ATTGTTCTGC TATATACAAC TTATGTTGGT TATTATTTCA        840
ATCAAAACAA TTTTATTTCA TC                                                 862

	SNP	left flanking [allel] right flanking
	SNP191847	CGAAGGAGTT[A/A]CTTAACGGAC
	SNP191846	CGGACAGGAA[G/G]TGGTTGTTGT
	SNP191845	TCCGATGTGA[A/A]GAGATTTGTC
	SNP191844	TTTGTCTCTC[G/G]GGAGGTTTGG
	SNP191843	ATGGTCCTAT[T/T]CACTTTCGTG
	SNP191842	GTGCTCCTTC[C/C]AAGATCTTCT
	SNP384533	TCTGGCGCAC[T/T]GTTCGCGGGA
	SNP191841	TCGCGGGATG[A/A]TTCCACACAA
	SNP191840	TGCTGCACTT[G/G]CTCGCTTGAA
	SNP191839	TCGCTTGAAG[G/G]TTTTTGAGGG
	SNP191838	TGAAGGTTTT[T/T]GAGGGAATCC
	SNP191837	GAATCCCACC[T/T]CCTTACGACA
	SNP191836	CACCTCCTTA[C/C]GACAAGATTA
	SNP191835	ATTGGGACGT[T/T]TATCTTCTGA
	SNP191834	GAAAGGAAAG[A/A]TCACAAGTGA
	SNP191833	CGGAAGAGAG[G/G]CTCGGATCAC
	SNP191832	GATGTTCTTG[C/C]CCCGGTCAAG

Sequence: AT4G13170.1

submitter of sequence:	public data
length:	1651
description:	genomic sequence (TAIR 7.0)

AT4G13170.1
ATGATAATCT ACTTTTTCAG AGCCGAAGCA AGGGAAGAAG AAGAAGAAGA AGATGGTGTC         60
TGGGTCAGGG ATATGCGCGA AGCGCGTTGT CGTCGACGGG CGACACCACA TGCTTGGTCG        120
TCTAGCTTCC AACACTGCGA AGGAGTTACT TAACGGACAG GAAGTGGTTG TTGTCCGATG        180
TGAAGAGATT TGTCTCTCGG GAGGTTTGGT TCGACAAAAG ATGAAGTACA TGAGATTCCT        240
TAGGAAACGT ATGAACACTA AGCCTTCTCA TGGTCCTATT CACTTTCGTG CTCCTTCCAA        300
GATCTTCTGG CGCACTGTTC GCGGGTTCGT TCGTTCACTC TAATTTTCTT CATTTTTATT        360
GGAGAAAGTT TGTAACTTTA TGATTAGTGC AAATGCGTTT TCTTTGTATA GATTTCGATT        420
ACTCTGTTTT TTTTTTTTTT TTTTTTTCTG TGTGTATAAG AGAATTGGTA GTTCAATTGT        480
GTAATTGTGT TTTGTATTTG TTGTGTGAGT GATAGAATTG TAGTAGGTGT GTTATAATGT        540
TAGAATTGTG GATATGTTAC TCTGGAATTG TTATGATTAG TTTCGATAAT AGTTTTTATA        600
GTTGCTGTGT GAGTAGTAGA AATGTAGCAT TTATACAAAG ATGTATTTTT TTATTTAATT        660
GAGTTTTGGA TATACTGCTC TCAAATTGTT GTGATAAGTT TTTGATAAAT GGTTCTGTAT        720
TTGCTGTTTG AGTAATAAAA ATGTAGCATA TGATTAGTTT CAATAATCGG TTTATGTGAA        780
AGTGTTTTCT TTGTGAAGAT TCAGTGATGT AGCGTTTTAA TAAAGATGAA GTCTTTCTTT        840
TTTTTTGAGT TTTGGTGAAA TTGAATTTTT GGCTTTTGTG GTTGCAGGAT GATTCCACAC        900
AAGACCAAGC GTGGTGCTGC TGCACTTGCT CGCTTGAAGG TTTTTGAGGG AATCCCACCT        960
CCTTACGACA AGATTAAGAG AATGGTTATT CCTGATGCTC TTAAGTAAGT TCTCTTTTGT       1020
TTTTTTGTTA TGTTTTGTTT CATGATTCTG TAATAGTTAA TGTCCAAATG TGTTAATGAT       1080
CTGTTGATTT TTTAATCAGG GTTTTGAGAC TTCAGAGTGG TCACAAGTAC TGCTTATTGG       1140
GACGTTTATC TTCTGAGGTT GGCTGGAACC ATTATGATAC CATTAAAGTG AGTATTTCGT       1200
ATTTCTGCTA GACGTATTTG TGTGTAGACA TCGAGTTATG GATACCAAAT CTGTTTACTT       1260
GGAGAATTTG TAGAACTAGG TCACTGAAAC TGATGTTTGG AGTTTTTGAT TCTAACAGGA       1320
ACTTGAGACA AAGAGAAAGG AAAGATCACA AGTGATGTAT GAGCGTAAGA AGCAACTCAA       1380
CAAGCTCAGG ACCAAGGCAG AGAAGGTTGC GGAAGAGAGG CTCGGATCAC AGCTAGATGT       1440
TCTTGCCCCG GTCAAGTATT GAAGAAAACC GACGTCTATC ACCTCAGAGT TTTACACCCG       1500
TTTGGTTGAA GCTTGTTTTG ATTTTGATTT TGCATCTGAA ATTTGGTTTT GTTAGTGTCA       1560
AAGTGAGAAT TCTCTCTTCT CATTTACTCA TTGTTCTGCT ATATACAACT TATGTTGGTT       1620
ATTATTTCAA TCAAAACAAT TTTATTTCAT C                                      1651

Sequence: AT4G13170.1

submitter of sequence:	public data
length:	621
description:	coding sequence (TAIR 7.0)

AT4G13170.1
ATGGTGTCTG GGTCAGGGAT ATGCGCGAAG CGCGTTGTCG TCGACGGGCG ACACCACATG         60
CTTGGTCGTC TAGCTTCCAA CACTGCGAAG GAGTTACTTA ACGGACAGGA AGTGGTTGTT        120
GTCCGATGTG AAGAGATTTG TCTCTCGGGA GGTTTGGTTC GACAAAAGAT GAAGTACATG        180
AGATTCCTTA GGAAACGTAT GAACACTAAG CCTTCTCATG GTCCTATTCA CTTTCGTGCT        240
CCTTCCAAGA TCTTCTGGCG CACTGTTCGC GGGATGATTC CACACAAGAC CAAGCGTGGT        300
GCTGCTGCAC TTGCTCGCTT GAAGGTTTTT GAGGGAATCC CACCTCCTTA CGACAAGATT        360
AAGAGAATGG TTATTCCTGA TGCTCTTAAG GTTTTGAGAC TTCAGAGTGG TCACAAGTAC        420
TGCTTATTGG GACGTTTATC TTCTGAGGTT GGCTGGAACC ATTATGATAC CATTAAAGAA        480
CTTGAGACAA AGAGAAAGGA AAGATCACAA GTGATGTATG AGCGTAAGAA GCAACTCAAC        540
AAGCTCAGGA CCAAGGCAGA GAAGGTTGCG GAAGAGAGGC TCGGATCACA GCTAGATGTT        600
CTTGCCCCGG TCAAGTATTG A                                                  621

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