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Gene: AT4G13170.1

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
60S ribosomal protein L13A (RPL13aC) (TAIR 9.0)

Gene Ontology
GO termIdentifierType
structural constituent of ribosomeGO:0003735molecular function
cytosolic large ribosomal subunitGO:0022625cellular component
translationGO:0006412biological process
ribosomeGO:0005840cellular component
membraneGO:0016020cellular component

Related with
531B09 T-DNA Line
373A12 T-DNA Line
248655_at Affymetrix representative on ATH1-121501
258837_at Affymetrix representative on ATH1-121501
254763_at Affymetrix representative on ATH1-121501
257599_at Affymetrix representative on ATH1-121501
MPMGp2011E08205 cDNA clone
MPIZp2000A094Q cDNA clone
MPIZp2000A054Q cDNA clone
223L7T7 cDNA clone
197G2T7 cDNA clone
MPIZp2001J194Q cDNA clone
MPMGp2011C12215 cDNA clone
MPMGp2011L10201 cDNA clone
MPIZp2001K124Q cDNA clone
MPMGp2011C04217 cDNA clone
MPIZp768P115Q cDNA clone
MPMGp2011P18217 cDNA clone
MPMGp2011N23206 cDNA clone
MPIZp767K1210Q cDNA clone
MPIZp767B1918Q cDNA clone
MPIZp1022J0121Q cDNA clone
MPIZp1022D198Q cDNA clone
MPIZp1022N237Q cDNA clone
MPIZp1022E2011Q cDNA clone
MPIZp1022E172Q cDNA clone
MSU_p955B1215 cDNA clone
MSU_p955G0319 cDNA clone
E10H6T7 cDNA clone
MPMGp2011K07211 cDNA clone
MPIZp769N043Q cDNA clone
MSU_p955H0425 cDNA clone
MPMGp2011P24211 cDNA clone
MPMGp2011O04214 cDNA clone
At1A08 cDNA clone
MSU_p955H0225 cDNA clone
CV651140 cDNA clone
MSU_p955P174 cDNA clone
BF154228 cDNA clone
BE919427 cDNA clone
BE343902 cDNA clone
BE920280 cDNA clone
BE921706 cDNA clone
BE343267 cDNA clone
BG598780 cDNA clone
BM112775 cDNA clone
BM114066 cDNA clone
BM112761 cDNA clone
BM109532 cDNA clone
BI177867 cDNA clone
BM406606 cDNA clone
BM112511 cDNA clone
BI920107 cDNA clone
BM112029 cDNA clone
BM404631 cDNA clone
BI407033 cDNA clone
BQ114260 cDNA clone
BI179617 cDNA clone
BG096430 cDNA clone
BG098207 cDNA clone

Orthologues and co-orthologues identified by INPARANOID
AT5G48760.2 Arabidopsis thaliana
AT5G48760.1 Arabidopsis thaliana
AT3G07110.1 Arabidopsis thaliana
AT5G48760.1 Arabidopsis thaliana
AT5G48760.2 Arabidopsis thaliana
CRE3_162845 Chlamydomonas reinhardtii
LOC_Os03g54890.1 Oryza sativa japonica

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
 
Sequence: AT4G13170.1
submitter of sequence: public data
length: 1651
description: genomic sequence (TAIR 9.0) 
AT4G13170.1
ATGATAATCT ACTTTTTCAG AGCCGAAGCA AGGGAAGAAG AAGAAGAAGA AGATGGTGTC         60
TGGGTCAGGG ATATGCGCGA AGCGCGTTGT CGTCGACGGG CGACACCACA TGCTTGGTCG        120
TCTAGCTTCC AACACTGCGA AGGAGTTACT TAACGGACAG GAAGTGGTTG TTGTCCGATG        180
TGAAGAGATT TGTCTCTCGG GAGGTTTGGT TCGACAAAAG ATGAAGTACA TGAGATTCCT        240
TAGGAAACGT ATGAACACTA AGCCTTCTCA TGGTCCTATT CACTTTCGTG CTCCTTCCAA        300
GATCTTCTGG CGCACTGTTC GCGGGTTCGT TCGTTCACTC TAATTTTCTT CATTTTTATT        360
GGAGAAAGTT TGTAACTTTA TGATTAGTGC AAATGCGTTT TCTTTGTATA GATTTCGATT        420
ACTCTGTTTT TTTTTTTTTT TTTTTTTCTG TGTGTATAAG AGAATTGGTA GTTCAATTGT        480
GTAATTGTGT TTTGTATTTG TTGTGTGAGT GATAGAATTG TAGTAGGTGT GTTATAATGT        540
TAGAATTGTG GATATGTTAC TCTGGAATTG TTATGATTAG TTTCGATAAT AGTTTTTATA        600
GTTGCTGTGT GAGTAGTAGA AATGTAGCAT TTATACAAAG ATGTATTTTT TTATTTAATT        660
GAGTTTTGGA TATACTGCTC TCAAATTGTT GTGATAAGTT TTTGATAAAT GGTTCTGTAT        720
TTGCTGTTTG AGTAATAAAA ATGTAGCATA TGATTAGTTT CAATAATCGG TTTATGTGAA        780
AGTGTTTTCT TTGTGAAGAT TCAGTGATGT AGCGTTTTAA TAAAGATGAA GTCTTTCTTT        840
TTTTTTGAGT TTTGGTGAAA TTGAATTTTT GGCTTTTGTG GTTGCAGGAT GATTCCACAC        900
AAGACCAAGC GTGGTGCTGC TGCACTTGCT CGCTTGAAGG TTTTTGAGGG AATCCCACCT        960
CCTTACGACA AGATTAAGAG AATGGTTATT CCTGATGCTC TTAAGTAAGT TCTCTTTTGT       1020
TTTTTTGTTA TGTTTTGTTT CATGATTCTG TAATAGTTAA TGTCCAAATG TGTTAATGAT       1080
CTGTTGATTT TTTAATCAGG GTTTTGAGAC TTCAGAGTGG TCACAAGTAC TGCTTATTGG       1140
GACGTTTATC TTCTGAGGTT GGCTGGAACC ATTATGATAC CATTAAAGTG AGTATTTCGT       1200
ATTTCTGCTA GACGTATTTG TGTGTAGACA TCGAGTTATG GATACCAAAT CTGTTTACTT       1260
GGAGAATTTG TAGAACTAGG TCACTGAAAC TGATGTTTGG AGTTTTTGAT TCTAACAGGA       1320
ACTTGAGACA AAGAGAAAGG AAAGATCACA AGTGATGTAT GAGCGTAAGA AGCAACTCAA       1380
CAAGCTCAGG ACCAAGGCAG AGAAGGTTGC GGAAGAGAGG CTCGGATCAC AGCTAGATGT       1440
TCTTGCCCCG GTCAAGTATT GAAGAAAACC GACGTCTATC ACCTCAGAGT TTTACACCCG       1500
TTTGGTTGAA GCTTGTTTTG ATTTTGATTT TGCATCTGAA ATTTGGTTTT GTTAGTGTCA       1560
AAGTGAGAAT TCTCTCTTCT CATTTACTCA TTGTTCTGCT ATATACAACT TATGTTGGTT       1620
ATTATTTCAA TCAAAACAAT TTTATTTCAT C                                      1651
 
Sequence: AT4G13170.1
submitter of sequence: public data
length: 621
description: coding sequence (TAIR 9.0) 
AT4G13170.1
ATGGTGTCTG GGTCAGGGAT ATGCGCGAAG CGCGTTGTCG TCGACGGGCG ACACCACATG         60
CTTGGTCGTC TAGCTTCCAA CACTGCGAAG GAGTTACTTA ACGGACAGGA AGTGGTTGTT        120
GTCCGATGTG AAGAGATTTG TCTCTCGGGA GGTTTGGTTC GACAAAAGAT GAAGTACATG        180
AGATTCCTTA GGAAACGTAT GAACACTAAG CCTTCTCATG GTCCTATTCA CTTTCGTGCT        240
CCTTCCAAGA TCTTCTGGCG CACTGTTCGC GGGATGATTC CACACAAGAC CAAGCGTGGT        300
GCTGCTGCAC TTGCTCGCTT GAAGGTTTTT GAGGGAATCC CACCTCCTTA CGACAAGATT        360
AAGAGAATGG TTATTCCTGA TGCTCTTAAG GTTTTGAGAC TTCAGAGTGG TCACAAGTAC        420
TGCTTATTGG GACGTTTATC TTCTGAGGTT GGCTGGAACC ATTATGATAC CATTAAAGAA        480
CTTGAGACAA AGAGAAAGGA AAGATCACAA GTGATGTATG AGCGTAAGAA GCAACTCAAC        540
AAGCTCAGGA CCAAGGCAGA GAAGGTTGCG GAAGAGAGGC TCGGATCACA GCTAGATGTT        600
CTTGCCCCGG TCAAGTATTG A                                                  621
 
Sequence: AT4G13170.1
submitter of sequence: public data
length: 207
description: amino acid sequence (TAIR 9.0) 
AT4G13170.1
MVSGSGICAK RVVVDGRHHM LGRLASNTAK ELLNGQEVVV VRCEEICLSG GLVRQKMKYM         60
RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG AAALARLKVF EGIPPPYDKI        120
KRMVIPDALK VLRLQSGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERSQ VMYERKKQLN        180
KLRTKAEKVA EERLGSQLDV LAPVKY*                                            207
 
Sequence: AT4G13170.1
submitter of sequence: public data
length: 862
description: cdna sequence (TAIR 9.0)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
 
AT4G13170.1
ATGATAATCT ACTTTTTCAG AGCCGAAGCA AGGGAAGAAG AAGAAGAAGA AGATGGTGTC         60
TGGGTCAGGG ATATGCGCGA AGCGCGTTGT CGTCGACGGG CGACACCACA TGCTTGGTCG        120
TCTAGCTTCC AACACTGCGA AGGAGTTACT TAACGGACAG GAAGTGGTTG TTGTCCGATG        180
TGAAGAGATT TGTCTCTCGG GAGGTTTGGT TCGACAAAAG ATGAAGTACA TGAGATTCCT        240
TAGGAAACGT ATGAACACTA AGCCTTCTCA TGGTCCTATT CACTTTCGTG CTCCTTCCAA        300
GATCTTCTGG CGCACTGTTC GCGGGATGAT TCCACACAAG ACCAAGCGTG GTGCTGCTGC        360
ACTTGCTCGC TTGAAGGTTT TTGAGGGAAT CCCACCTCCT TACGACAAGA TTAAGAGAAT        420
GGTTATTCCT GATGCTCTTA AGGTTTTGAG ACTTCAGAGT GGTCACAAGT ACTGCTTATT        480
GGGACGTTTA TCTTCTGAGG TTGGCTGGAA CCATTATGAT ACCATTAAAG AACTTGAGAC        540
AAAGAGAAAG GAAAGATCAC AAGTGATGTA TGAGCGTAAG AAGCAACTCA ACAAGCTCAG        600
GACCAAGGCA GAGAAGGTTG CGGAAGAGAG GCTCGGATCA CAGCTAGATG TTCTTGCCCC        660
GGTCAAGTAT TGAAGAAAAC CGACGTCTAT CACCTCAGAG TTTTACACCC GTTTGGTTGA        720
AGCTTGTTTT GATTTTGATT TTGCATCTGA AATTTGGTTT TGTTAGTGTC AAAGTGAGAA        780
TTCTCTCTTC TCATTTACTC ATTGTTCTGC TATATACAAC TTATGTTGGT TATTATTTCA        840
ATCAAAACAA TTTTATTTCA TC                                                 862
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