GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Clone: At1A03 (EST)

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	Columbia

Related with

AT2G34430.1	annotated gene (TAIR7)
AT2G34420.1	annotated gene (TAIR7)
AT1G29930.1	annotated gene (TAIR7)
AT1G29920.1	annotated gene (TAIR7)
AT1G29910.1	annotated gene (TAIR7)
At.71449	unigene cluster
At.69621	unigene cluster
Bol.3992	unigene cluster
Bra.5523	unigene cluster
Zm.81532	unigene cluster
Zm.82076	unigene cluster
At.66422	unigene cluster
Bra.280	unigene cluster
Bra.3018	unigene cluster
At.48248	unigene cluster
At.24351	unigene cluster
At.48249	unigene cluster
Bol.3844	unigene cluster
Bol.3889	unigene cluster
AT2G34430.1	annotated gene (TAIR9)
AT2G34420.1	annotated gene (TAIR9)
AT1G29910.1	annotated gene (TAIR9)
AT1G29930.1	annotated gene (TAIR9)
AT1G29920.1	annotated gene (TAIR9)

Mapping Info
map	species	chr.	mapped as	position	submitter
F1840	Solanum tuberosum	2	At1A3-a	29.002 cM	Dr. Christiane Gebhardt
F1840	Solanum tuberosum	3	At1A3-b	0 cM	Dr. Christiane Gebhardt

Reference:
	Tanksley SD, Ganal MW, Prince JP, de Vicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB, Messeguer R, Miller JC, Miller L, Paterson AH, Pineda O, Röder MS, Wing RA, Wu W, Young ND, 1992: Genetics 132: 1141-1160
	Go to PubMed
	Gebhardt C, Walkemeier B, Henselewski H, Barakat A, Delseny M, Stüber K, 2003: The Plant Journal 34: 529-541
	Go to PubMed
	Dominguez I, Graziano E, Gebhardt C, Barakat A, Berry S, Arús P, Delseny M, Barnes S, 2003: Plant Biotechnology J 1: 91-99
	http://soldb.cit.cornell.edu/maps/pennellii_il_map.html, : :
	Pan Q, Liu Y-S, Budai-Hadrian O, Sela M, Carmel-Goren L, Zamir D, Fluhr R, 2000: Genetics 155: 309-322
	Go to PubMed

Sequence: At1A03

submitter of sequence:	public data
length:	1301
GenBankAc:	X64459
description:	Chlorophyll ab binding protein, LHCP

At1A03
ACAATGGGTA TTCCAATATG CTAAGATGCT ACGAGATATC TAATTTATCT AACACAACTC         60
AATTCCAAAC CAAAAATCTG ATGCCAGCTC GACAAGACAA AAAATCTAAG CTCAAAAATG        120
TCAACAACCA ATAGAAATCA AGGCATTGAC GATATCACGA GATAAGCAAA TTAAATCTTC        180
AAGTTTTGCA ATTCATATGT ACGTTATAAA TACCCAAAAA CCTCACCGTA ACCTAGCTAT        240
CCAATTTCAT CACATCTTAT TAACTAAAGA GCCTTTTACT TGCGCCACAC TCTCACCGCA        300
ATGGCCGCCT CGACAATGGC TCTCTCCTCT CCTGCTTTGA CCGGAAAGGC CGTTAAGCTA        360
TCCCCGGCGG CCTCCGAAGT ATTTGGAACC GGCCGAATCA CCATGCGCAA AGCCTCCAAG        420
CCCACCGGTC CATCCGGCAG CCCATGGTAC GGATCCGACC GAGTCAAGTA CTTGGGTCCA        480
TTCTCCGGTG AGCCTCCGAG CTACCTCACT GGAGAGTTCC CCGGTGATTA CGGGTGGGAC        540
ACTGCCGGTC TATCCGCCGA TCCCGAGACC TTCGCTAGGA ACCGTGAGCT AGAAGTTATC        600
CACAGCAGAT GGGCCATGCT CGGAGCCCTA GGCTGCGTTT TCCCTGAGCT ATTGGCTAGG        660
AACGGAGTGA AGTTCGGAGA AGCGGTTTGG TTCAAGGCTG GTTCACAGAT CTTCAGCGAC        720
GGAGGATTGG ACTACTTGGG CAACCCGAGC TTGGTCCACG CTCAGAGCAT CTTAGCCATT        780
TGGGCTACTC AAGTTATCCT CATGGGAGCT GTTGAGGGCT ACAGAGTCGC CGGAGATGGT        840
CCATTGGGAG AAGCAGAGGA CTTGCTTTAC CCAGGTGGGA GCTTCGACCC ATTGGGCCTC        900
GCTACTGACC CCGAGGCTTT CGCGGAGTTG AAGGTGAAGG AGCTCAAGAA CGGAAGGTTG        960
GCTATGTTCT CTATGTTTGG ATTCTTCGTT CAGGCCATTG TCACCGGAAA GGGACCGTTG       1020
GAGAACCTCG CGGACCACTT GGCTGATCCA GTCAACAACA ATGCATGGGC CTTCGCTACC       1080
AACTTCGTCC CCGGAAAGTG AGTTTAATTT GTGATCGAGT TGTGTGTATC CGGTTTGTTG       1140
CATCTTGGAA ATGTGATGCA GATTTCATAT CTTGTAAATT ACTTTGTATG TGTGTGAAAT       1200
ATTTAAGAAG CTTTATGATA TTGATGGATC AGTCACTTAC TATTTACTAA TGTTGCAAGA       1260
ACATACTTAG ACCTAATTCC GGTGTTCACA CAACATAGTT T                           1301

view Blast Searches

non redundant GenBank CDS translations \+ PDB \+ SwissProt \+ PIR on 09-MAR-07
E-val	simil.	overlap	accno	description
01e-140	96	267	GenBankAc:NP_174286.1	ref\|NP_174286.1\| CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding [Arabidopsis thaliana] gb\|AAM14108.1\| putative chlorophyll a/b-binding protein [Arabidopsis thaliana] gb\|AAK93612.1\| putative photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] gb\|AAL25594.1\| At1g29930/F1N18_23 [Arabidopsis thaliana] gb\|AAL16289.1\| At1g29930/F1N18_23 [Arabidopsis thaliana] gb\|AAK74031.1\| At1g29930/F1N18_23 [Arabidopsis thaliana] emb\|CAA27543.1\| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis thaliana] gb\|AAG10603.1\| Putative chlorophyll a/b-binding protein [Arabidopsis thaliana] sp\|P04778\|CB22_ARATH Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP)
01e-139	95	267	GenBankAc:NP_564339.1	ref\|NP_564339.1\| CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding [Arabidopsis thaliana] ref\|NP_564340.1\| CAB2; chlorophyll binding [Arabidopsis thaliana] gb\|AAN31868.1\| putative photosystem II type I chlorophyll a /b binding protein [Arabidopsis thaliana] gb\|AAM91548.1\| photosystem II type I chlorophyll a/b binding protein, putative [Arabidopsis thaliana] gb\|AAM10134.1\| chlorophyll a/b-binding protein [Arabidopsis thaliana] gb\|AAL32892.1\| chlorophyll a/b-binding protein [Arabidopsis thaliana] gb\|AAL31113.1\| At1g29920/F1N18_80 [Arabidopsis thaliana] gb\|AAL06859.1\| At1g29920/F1N18_80 [Arabidopsis thaliana] gb\|AAK97707.1\| At1g29920/F1N18_80 [Arabidopsis thaliana] emb\|CAA27541.1\| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis thaliana] emb\|CAA27540.1\| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana] gb\|AAG10605.1\| chlorophyll a/b-binding protein [Arabidopsis thaliana] gb\|AAG10604.1\| chlorophyll a/b-binding protein [Arabidopsis thaliana] gb\|AAM63949.1\| photosystem II type I chlorophyll a /b binding protein, putative [Arabidopsis thaliana] sp\|P04777\|CB21_ARATH Chlorophyll a-b binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180)
01e-146	100	266	GenBankAc:NP_565787.1	ref\|NP_565787.1\| LHB1B1; chlorophyll binding [Arabidopsis thaliana] gb\|AAK00369.1\| putative photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] gb\|AAG41446.1\| putative photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] gb\|AAM53334.1\| putative photosystem II type I chlorophyll a/b binding protein. [Arabidopsis thaliana] gb\|AAM14951.1\| putative photosystem II type I chlorophyll a b binding protein. [Arabidopsis thaliana] gb\|AAC26709.1\| putative photosystem II type I chlorophyll a/b binding protein. [Arabidopsis thaliana] emb\|CAA45789.1\| photosystem II type I chlorophyll a /b binding protein [Arabidopsis thaliana] gb\|AAN72114.1\| putative photosystem II type I chlorophyll a/b binding protein. [Arabidopsis thaliana]
01e-145	99	266	GenBankAc:AAM64379.1	gb\|AAM64379.1\| putative photosystem II type I chlorophyll a b binding protein. [Arabidopsis thaliana]
01e-142	96	266	GenBankAc:CAA34459.1	emb\|CAA34459.1\| unnamed protein product [Sinapis alba] emb\|CAA33903.1\| chlorophyll a/b-binding polypeptide [Sinapis alba] sp\|P13851\|CB21_SINAL Chlorophyll a-b binding protein 1, chloroplast precursor (LHCII type I CAB-1) (LHCP)
All nt+env_nt+patnt+pdbnt on 06-APR-10
E-val	simil.	overlap	accno	description
00e1	100	1301	GenBankAc:X64459.1	A.thaliana Lhb1B1 gene for photosystem II type I chlorophyll a/b binding protein
00e1	99.8	1301	GenBankAc:AC004077.3	Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete sequence
00e1	99.8	1301	GenBankAc:AC004481.3	Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete sequence
00e1	98.7	1009	GenBankAc:AF324693.2	Arabidopsis thaliana At2g34430 (At2g34430/T31E10.23) mRNA, complete cds
00e1	100	1008	GenBankAc:NM_128995.2	Arabidopsis thaliana LHB1B1; chlorophyll binding (LHB1B1) mRNA, complete cds
00e1	100	1008	GenBankAc:GM041830.1	Sequence 27 from Patent WO2008061156
00e1	100	1004	GenBankAc:AF326864.1	Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At2g34430) mRNA, complete cds
00e1	100	1003	GenBankAc:AY120776.1	Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein. (At2g34430) mRNA, complete cds
00e1	99.8	979	GenBankAc:AY086307.1	Arabidopsis thaliana clone 23727 mRNA, complete sequence
00e1	100	867	GenBankAc:AR632128.1	Sequence 7 from patent US 6844484
00e1	99.9	853	GenBankAc:BT002103.1	Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein. (At2g34430) mRNA, complete cds
00e1	100	851	GenBankAc:AF339687.1	Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At2g34430) mRNA, complete cds
00e1	89.4	824	GenBankAc:DQ244549.1	Zea mays clone 9076 mRNA sequence
00e1	87.8	811	GenBankAc:AC189366.2	Brassica rapa subsp. pekinensis clone KBrB046G20, complete sequence
00e1	88.2	808	GenBankAc:AC008030.4	Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence
00e1	88.2	808	GenBankAc:NM_102731.2	Arabidopsis thaliana CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding (CAB3) mRNA, complete cds
00e1	88.1	808	GenBankAc:X03908.1	A.thaliana gene (LHCP AB 180) for chlorophyll a/b binding protein
00e1	88.1	808	GenBankAc:AY065165.1	Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29910; F1N18.5) mRNA, complete cds
00e1	87.1	808	GenBankAc:AY086905.1	Arabidopsis thaliana clone 29298 mRNA, complete sequence
00e1	86.9	808	GenBankAc:NM_102733.2	Arabidopsis thaliana CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding (CAB1) mRNA, complete cds
00e1	86.9	808	GenBankAc:NM_102732.2	Arabidopsis thaliana CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2); chlorophyll binding (CAB2) mRNA, complete cds
00e1	86.9	808	GenBankAc:BT000726.1	Arabidopsis thaliana clone RAFL06-67-G16 (R11472) putative photosystem II type I chlorophyll a /b binding protein (At1g29920) mRNA, complete cds
00e1	86.9	808	GenBankAc:AY050935.1	Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At1g29930) mRNA, complete cds
00e1	86.9	808	GenBankAc:AY128345.1	Arabidopsis thaliana photosystem II type I chlorophyll a/b binding protein, putative (At1g29920) mRNA, complete cds
00e1	86.9	808	GenBankAc:AY062814.1	Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29920; F1N18.4) mRNA, complete cds
00e1	86.9	808	GenBankAc:AY058180.1	Arabidopsis thaliana At1g29930/F1N18_23 mRNA, complete cds
00e1	86.9	808	GenBankAc:AY054198.1	Arabidopsis thaliana At1g29920/F1N18_80 mRNA, complete cds
00e1	86.9	808	GenBankAc:AY052237.1	Arabidopsis thaliana At1g29920/F1N18_80 mRNA, complete cds
00e1	86.9	808	GenBankAc:BX815726.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS89ZA03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)
00e1	86.9	808	GenBankAc:X03907.1	A.thaliana gene (LHCP AB 165) for chlorophyll a/b binding protein
00e1	86.9	808	GenBankAc:BX815776.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS93ZB12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)
00e1	86.9	808	GenBankAc:AC008030.4	Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence
00e1	86.9	808	GenBankAc:AC008030.4	Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence
00e1	86.8	808	GenBankAc:AY288914.1	Brassica oleracea chlorophyll a/b binding protein mRNA, complete cds; nuclear gene for chloroplast product
00e1	86.8	808	GenBankAc:X03909.1	A.thaliana gene (LHCP AB 140) for chlorophyll a/b binding protein
00e1	86.8	808	GenBankAc:CS258414.1	Sequence 97 from Patent EP1571221
00e1	86.8	808	GenBankAc:BD248405.1	Gene participating in tolerance against environmental stress
00e1	88.2	806	GenBankAc:GP683301.1	Sequence 29244 from patent US 7569389
00e1	88.1	806	GenBankAc:GP683230.1	Sequence 28978 from patent US 7569389
00e1	88.1	806	GenBankAc:AY114594.1	Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29910) mRNA, complete cds
00e1	86.8	806	GenBankAc:AY081572.1	Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29920) mRNA, complete cds
00e1	86.8	806	GenBankAc:AY091169.1	Arabidopsis thaliana putative chlorophyll a/b-binding protein (At1g29930) mRNA, complete cds
00e1	86.8	805	GenBankAc:AY060500.1	Arabidopsis thaliana At1g29920/F1N18_80 mRNA, complete cds
00e1	87.2	804	GenBankAc:DQ645428.1	Brassica napus chloroplast chlorophyll a/b binding protein mRNA, complete cds; nuclear gene for chloroplast product
00e1	90.8	802	GenBankAc:X16436.1	Mustard cab gene for chlorophyll a/b-binding protein
00e1	90.8	802	GenBankAc:X15894.1	Sinapsis alba cab-1 gene for chlorophyll a/b-binding polypeptide
00e1	90.4	802	GenBankAc:AF458406.1	Brassica oleracea chlorophyll a/b binding protein (CAB1) mRNA, complete cds
00e1	86.4	750	GenBankAc:BX817619.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL33ZA06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)
00e1	100	722	GenBankAc:EA365584.1	Sequence 435 from patent US 7309815
00e1	95.9	676	GenBankAc:AC004077.3	Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete sequence
00e1	95.9	676	GenBankAc:GM041828.1	Sequence 25 from Patent WO2008061156
00e1	95.9	676	GenBankAc:GM041822.1	Sequence 19 from Patent WO2008061156
00e1	95.9	676	GenBankAc:NM_128994.3	Arabidopsis thaliana LHB1B2; chlorophyll binding (LHB1B2) mRNA, complete cds
00e1	95.9	676	GenBankAc:AK229627.1	Arabidopsis thaliana mRNA for photosystem II type I chlorophyll a/b binding protein, complete cds, clone: RAFL19-61-E05
00e1	95.9	676	GenBankAc:AY142513.1	Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At2g34420) mRNA, complete cds
00e1	95.9	676	GenBankAc:AC004481.3	Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete sequence
00e1	95.9	676	GenBankAc:AY081587.1	Arabidopsis thaliana photosystem II type I chlorophyll a/b binding protein (At2g34420) mRNA, complete cds
00e1	95.9	676	GenBankAc:AY065125.1	Arabidopsis thaliana photosystem II type I chlorophyll a/b binding protein (At2g34420; T31E10.24) mRNA, complete cds
00e1	95.9	676	GenBankAc:AF419587.1	Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds
00e1	95.9	676	GenBankAc:BX820019.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS62ZC05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)
00e1	95.9	676	GenBankAc:BX820007.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS5ZF09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)
00e1	95.9	676	GenBankAc:X64460.1	A.thaliana Lhb1B2 gene for photosystem II chlorophyll a/b binding protein
00e1	95.9	676	GenBankAc:AY045806.1	Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At2g34420) mRNA, complete cds
00e1	95.7	676	GenBankAc:AF419548.1	Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds
00e1	95.7	676	GenBankAc:BX822910.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB71ZG07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)
00e1	95	676	GenBankAc:BX821638.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL5ZG08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)
00e1	94.7	676	GenBankAc:BX821505.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL46ZF04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)
00e1	95.9	675	GenBankAc:AY079110.1	Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds
00e1	95.9	675	GenBankAc:AX507549.1	Sequence 2244 from Patent WO0216655
00e1	95.7	675	GenBankAc:AY079101.1	Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds
00e1	91.6	675	GenBankAc:BX821952.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL87ZD09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)
00e1	88.6	675	GenBankAc:BT015572.1	Arabidopsis thaliana At1g29910 mRNA sequence
01e-104	82.4	675	GenBankAc:XM_002524570.1	Ricinus communis chlorophyll A/B binding protein, putative, mRNA
02e-87	81.3	674	GenBankAc:FJ907952.1	Mangifera indica cultivar Zi Hua chloroplast chlorophyll A/B binding protein (MCAB) mRNA, complete cds; nuclear gene for chloroplast product
00e1	88.7	673	GenBankAc:AC022455.5	Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence
00e1	92.1	672	GenBankAc:DQ246008.1	Zea mays clone 94546 mRNA sequence
01e-88	81.4	672	GenBankAc:AP004473.1	Lotus japonicus genomic DNA, chromosome 4, clone: LjT10J15, TM0007, complete sequence
07e-72	80.4	672	GenBankAc:AB012638.1	Nicotiana sylvestris Lhcb15, Lhcb16 genes for light harvesting chlorophyll a/b-binding protein, complete cds
05e-48	78.9	672	GenBankAc:EA365595.1	Sequence 446 from patent US 7309815
01e-91	81.2	671	GenBankAc:AM452362.1	Vitis vinifera contig VV78X107905.8, whole genome shotgun sequence
02e-99	82.1	670	GenBankAc:XM_002275039.1	PREDICTED: Vitis vinifera hypothetical protein LOC100241745 (LOC100241745), mRNA
01e-100	82.1	670	GenBankAc:AM447362.2	Vitis vinifera contig VV78X207753.10, whole genome shotgun sequence
06e-97	81.9	670	GenBankAc:AF139467.2	Vigna radiata LHCII type I chlorophyll a/b binding protein (CipLhcb1) mRNA, complete cds; nuclear gene for chloroplast product
09e-90	81.5	670	GenBankAc:XM_002519678.1	Ricinus communis chlorophyll A/B binding protein, putative, mRNA
09e-90	81.5	670	GenBankAc:XM_002274906.1	PREDICTED: Vitis vinifera hypothetical protein LOC100252004 (LOC100252004), mRNA
05e-85	81.2	670	GenBankAc:EF549584.1	Artemisia annua chloroplast light-harvesting chlorophyll a/b-binding protein mRNA, partial cds; nuclear gene for chloroplast product
02e-75	80.6	670	GenBankAc:XM_002307689.1	Populus trichocarpa light-harvesting complex II protein Lhcb1 (Lhcb1-3), mRNA
02e-75	80.6	670	GenBankAc:EF146739.1	Populus trichocarpa clone WS01213_B15 unknown mRNA
04e-73	80.4	670	GenBankAc:XM_002306891.1	Populus trichocarpa light-harvesting complex II protein Lhcb1 (Lhcb1-2), mRNA
04e-73	80.4	670	GenBankAc:EF147785.1	Populus trichocarpa clone WS0125_A05 unknown mRNA
04e-73	80.4	670	GenBankAc:AC186755.1	Musa balbisiana clone MBP_91N22, complete sequence
03e-68	80.1	670	GenBankAc:AC186746.1	Musa acuminata clone MA4_25J11, complete sequence
03e-68	80.1	670	GenBankAc:EF148766.1	Populus trichocarpa x Populus deltoides clone WS0137_J16 unknown mRNA
02e-63	79.9	670	GenBankAc:EF148596.1	Populus trichocarpa x Populus deltoides clone WS0134_I20 unknown mRNA
02e-63	79.9	670	GenBankAc:M29334.1	L.gibba light-harvesting chlorophyll a/b protein gene, complete cds
02e-63	79.9	670	GenBankAc:EF148774.1	Populus trichocarpa x Populus deltoides clone WS0137_M02 unknown mRNA
04e-61	79.7	670	GenBankAc:XM_002440218.1	Sorghum bicolor hypothetical protein, mRNA
02e-56	79.4	670	GenBankAc:XM_002455857.1	Sorghum bicolor hypothetical protein, mRNA
01e-51	79.1	670	GenBankAc:XM_002285610.1	PREDICTED: Vitis vinifera hypothetical protein LOC100245214 (LOC100245214), mRNA
01e-51	79.1	670	GenBankAc:AM482385.1	Vitis vinifera contig VV78X166167.13, whole genome shotgun sequence
01e-98	82.2	669	GenBankAc:AJ843976.1	Plantago major partial mRNA for light harvesting protein 1 (lhc1 gene)
08e-87	81.3	669	GenBankAc:AF034631.1	Panax ginseng chlorophyll a/b binding protein of LHCII type I precursor (CAB) mRNA, nuclear gene encoding chloroplast protein, complete cds
06e-63	79.8	669	GenBankAc:X52744.1	Tabacco Cab40 mRNA for major chlorophyll a/b binding protein
06e-63	79.8	669	GenBankAc:XM_002455856.1	Sorghum bicolor hypothetical protein, mRNA
02e-60	79.7	669	GenBankAc:DQ252493.1	Solanum tuberosum clone 062G02 chlorophyll a-b binding protein 3C-like mRNA, complete cds
09e-56	79.4	669	GenBankAc:EA366512.1	Sequence 1363 from patent US 7309815
00e1	90.4	667	GenBankAc:AR014652.1	Sequence 1 from patent US 5773692
07e-69	80.2	667	GenBankAc:AF220527.1	Euphorbia esula chlorophyll a/b binding protein precursor, mRNA, complete cds
02e-59	79.6	667	GenBankAc:EU581896.1	Ophiopogon japonicus chloroplast chlorophyll a/b-binding protein mRNA, complete cds; nuclear gene for chloroplast product
01e-54	79.3	667	GenBankAc:FJ654429.1	Gardenia jasminoides chlorophyll A/B binding protein (CAB1) mRNA, complete cds
02e-63	79.9	666	GenBankAc:EA365598.1	Sequence 449 from patent US 7309815
09e-59	79.6	666	GenBankAc:EA365607.1	Sequence 458 from patent US 7309815
03e-49	79	666	GenBankAc:EA365606.1	Sequence 457 from patent US 7309815
08e-47	78.8	666	GenBankAc:X52742.1	Tabacco Cab50 mRNA for major chlorophyll a/b binding protein
03e-77	81.1	665	GenBankAc:XM_002316701.1	Populus trichocarpa light-harvesting complex II protein Lhcb1 (Lhcb1-1), mRNA
07e-75	80.6	665	GenBankAc:EU041720.1	Pisum sativum chloroplast chlorophyll a/b binding protein (cab8) mRNA, complete cds; nuclear gene for chloroplast product
02e-72	80.5	665	GenBankAc:X56538.1	P.sativum Cab-8 gene for photosystemm II chlorophyll a/b binding protein
03e-65	80	665	GenBankAc:AM231284.5	Spinacia oleracea lhcb1.3 gene for major chlorophyll a/b binding protein LHCb1.3
03e-65	80	665	GenBankAc:X14341.1	S.oleracea chloroplast mRNA for chlorophyll a/b binding protein
06e-63	79.8	665	GenBankAc:X52743.1	Tabacco Cab21 mRNA for major chlorophyll a/b binding protein
06e-63	79.8	665	GenBankAc:EA365596.1	Sequence 447 from patent US 7309815
06e-63	79.8	665	GenBankAc:EA366539.1	Sequence 1390 from patent US 7309815
02e-53	79.2	665	GenBankAc:CU468238.3	S.lycopersicum DNA sequence from clone SL_MboI-103M17, complete sequence
05e-51	79.1	665	GenBankAc:AC215381.1	Solanum lycopersicum chromosome 2 clone C02HBa0091J18, complete sequence
01e-48	78.9	665	GenBankAc:AK319572.1	Solanum lycopersicum cDNA, clone: LEFL1053CG07, HTC in leaf
01e-48	78.9	665	GenBankAc:AK319478.1	Solanum lycopersicum cDNA, clone: LEFL1006AF02, HTC in leaf
01e-48	78.9	665	GenBankAc:X02360.1	Petunia gene for chlorophyll a/b binding protein cab 22R
03e-46	78.8	665	GenBankAc:M21397.1	Tobacco chlorophyll a/b-binding protein (Cab-C) gene, complete cds
08e-84	81.2	664	GenBankAc:AF003127.1	Mesembryanthemum crystallinum chlorophyll a/b-binding protein (CAB) mRNA, nuclear gene encoding chloroplast protein, complete cds
05e-79	80.9	664	GenBankAc:AY430082.1	Trifolium pratense chlorophyll a/b binding protein mRNA, complete cds; nuclear gene for chloroplast product
02e-62	79.8	664	GenBankAc:AF279250.1	Vigna radiata LHCII type I chlorophyll a/b-binding protein (CipLhcb1*3) mRNA, complete cds; nuclear gene for chloroplast product
05e-48	78.9	664	GenBankAc:DQ471302.1	Carya cathayensis putative chloroplast chlorophyll a/b-binding protein (ABC) mRNA, complete cds; nuclear gene for chloroplast product
01e-107	82.7	663	GenBankAc:BABE01008202.1	Human gut metagenome DNA, contig sequence: In-E_008202, whole genome shotgun sequence
02e-97	82.1	663	GenBankAc:L07119.1	Gossypium hirsutum chloroplast photosystem II chlorophyll A/B-binding protein gene, complete cds
04e-95	81.9	663	GenBankAc:FJ797564.1	Gossypium hirsutum chloroplast chlorophyll A-B binding protein (CBP2) mRNA, complete cds; nuclear gene for chloroplast product
01e-73	80.5	663	GenBankAc:AF072931.1	Medicago sativa chlorophyll a/b binding protein (CARCAB1) mRNA, complete cds
03e-71	80.4	663	GenBankAc:EU078170.1	Populus euphratica chloroplast light harvesting chlorophyll a/b binding protein mRNA, complete cds; nuclear gene for chloroplast product
03e-52	79.2	663	GenBankAc:AY845253.1	Pisum sativum light-harvesting chlorophyll-a/b binding protein Lhcb1 mRNA, complete cds
08e-50	79	663	GenBankAc:AK319519.1	Solanum lycopersicum cDNA, clone: LEFL1029CE02, HTC in leaf
08e-50	79	663	GenBankAc:CU468238.3	S.lycopersicum DNA sequence from clone SL_MboI-103M17, complete sequence
02e-47	78.9	663	GenBankAc:AK319661.1	Solanum lycopersicum cDNA, clone: LEFL1095DA08, HTC in leaf
02e-47	78.9	663	GenBankAc:CU468238.3	S.lycopersicum DNA sequence from clone SL_MboI-103M17, complete sequence
04e-61	79.8	662	GenBankAc:XM_002460577.1	Sorghum bicolor hypothetical protein, mRNA
06e-63	79.9	661	GenBankAc:AB012637.1	Nicotiana sylvestris Lhcb12, Lhcb13, Lhcb1*4 genes for light harvesting chlorophyll a/b-binding protein, complete cds
02e-60	79.7	661	GenBankAc:AB012636.1	Nicotiana sylvestris Lhcb1*1 gene for light harvesting chlorophyll a/b-binding protein, complete cds
04e-58	79.6	661	GenBankAc:U21111.1	Solanum tuberosum chlorophyll a/b binding protein (Lhcb1-1) gene, nuclear gene encoding chloroplast protein, complete cds
09e-56	79.4	661	GenBankAc:AC215381.1	Solanum lycopersicum chromosome 2 clone C02HBa0091J18, complete sequence
09e-56	79.4	661	GenBankAc:U20983.1	Solanum tuberosum chlorophyll a/b binding protein (Lhcb1-2) gene, nuclear gene encoding chloroplast protein, complete cds
02e-53	79.3	661	GenBankAc:BT014208.1	Lycopersicon esculentum clone 133385R, mRNA sequence
02e-53	79.3	661	GenBankAc:M14443.1	Tomato chlorophyll a/b-binding protein gene Cab-1B, complete cds
02e-53	79.3	661	GenBankAc:AK319651.1	Solanum lycopersicum cDNA, clone: LEFL1092DG10, HTC in leaf
05e-51	79.1	661	GenBankAc:AK246608.1	Solanum lycopersicum cDNA, clone: FC16CH12, HTC in fruit
03e-46	78.8	661	GenBankAc:AC215381.1	Solanum lycopersicum chromosome 2 clone C02HBa0091J18, complete sequence
03e-46	78.8	661	GenBankAc:AB012637.1	Nicotiana sylvestris Lhcb12, Lhcb13, Lhcb1*4 genes for light harvesting chlorophyll a/b-binding protein, complete cds
08e-44	78.7	661	GenBankAc:AC215381.1	Solanum lycopersicum chromosome 2 clone C02HBa0091J18, complete sequence
05e-39	78.4	661	GenBankAc:AB012637.1	Nicotiana sylvestris Lhcb12, Lhcb13, Lhcb1*4 genes for light harvesting chlorophyll a/b-binding protein, complete cds
02e-59	79.7	659	GenBankAc:M64619.1	Pea cab gene, complete cds
02e-59	79.7	659	GenBankAc:K02067.1	Pea (P.sativum) gene AB80 encoding major light-harvesting chlorophyll a/b-binding protein (polypeptide 15) complex precursor, complete coding sequence
06e-57	79.5	659	GenBankAc:AR156065.1	Sequence 1 from patent US 6239332
06e-57	79.5	659	GenBankAc:EA365591.1	Sequence 442 from patent US 7309815
02e-63	79.9	658	GenBankAc:AC215381.1	Solanum lycopersicum chromosome 2 clone C02HBa0091J18, complete sequence
09e-53	79.3	656	GenBankAc:AY389549.1	Hyacinthus orientalis chloroplast chlorophyll A-B binding protein 3C (LHCP) mRNA, partial cds
01e-45	78.8	656	GenBankAc:AM231286.3	Spinacia oleracea lhcb1.1 gene for major chlorophyll a/b binding protein LHCb1.1
01e-61	79.8	655	GenBankAc:AB211497.1	Lemna paucicostata LpCAB1 mRNA for CAB homologue1, partial cds
TAIR7_cdna_20070425 on 10-JAN-08
E-val	simil.	overlap	accno	description
00e0	100	1008	GabiPD:AT2G34430.1 TAIR:AT2G34430.1	AT2G34430.1 \| Symbols: LHCB1.4, LHB1B1 \| LHB1B1 (Photosystem II light harvesting complex gene 1.4); chlorophyll binding \| chr2:14531835-14532842 FORWARD
00e0	95.8	676	GabiPD:AT2G34420.1 TAIR:AT2G34420.1	AT2G34420.1 \| Symbols: LHCB1.5, LHB1B2 \| LHB1B2 (Photosystem II light harvesting complex gene 1.5); chlorophyll binding \| chr2:14529603-14530647 REVERSE
01e-14	86.5	107	GabiPD:AT2G05070.1 TAIR:AT2G05070.1	AT2G05070.1 \| Symbols: LHCB2.2 \| LHCB2.2 (Photosystem II light harvesting complex gene 2.2); chlorophyll binding \| chr2:1799231-1800389 REVERSE
00e0	88.7	97	GabiPD:AT1G29930.1 TAIR:AT1G29930.1	AT1G29930.1 \| Symbols: AB140, CAB140, LHCB1.3, CAB1 \| CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding \| chr1:10477989-10479032 FORWARD
00e0	88.6	97	GabiPD:AT1G29920.1 TAIR:AT1G29920.1	AT1G29920.1 \| Symbols: CAB2, AB165, LHCB1.1 \| CAB2 (Chlorophyll a/b-binding protein 2); chlorophyll binding \| chr1:10474768-10475943 REVERSE
02e-20	88.4	90	GabiPD:AT5G54270.1 TAIR:AT5G54270.1	AT5G54270.1 \| Symbols: LHCB3*1, LHCB3 \| LHCB3 (LIGHT-HARVESTING CHLOROPHYLL BINDING PROTEIN 3) \| chr5:22055499-22056794 FORWARD
02e-17	85.3	89	GabiPD:AT2G05100.1 TAIR:AT2G05100.1	AT2G05100.1 \| Symbols: LHCB2.3, LHCB2.1 \| LHCB2.1 (Photosystem II light harvesting complex gene 2.1); chlorophyll binding \| chr2:1823237-1824422 REVERSE
03e-6	83.1	83	GabiPD:AT3G27690.1 TAIR:AT3G27690.1	AT3G27690.1 \| Symbols: LHCB2.3, LHCB2:4 \| LHCB2:4 (Photosystem II light harvesting complex gene 2.3); chlorophyll binding \| chr3:10257184-10258248 FORWARD
00e0	90.5	82	GabiPD:AT1G29910.1 TAIR:AT1G29910.1	AT1G29910.1 \| Symbols: CAB3, AB180, LHCB1.2 \| CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding \| chr1:10472264-10473283 REVERSE
09e-7	96.8	32	GabiPD:AT3G61470.1 TAIR:AT3G61470.1	AT3G61470.1 \| Symbols: LHCA2 \| LHCA2 (Photosystem I light harvesting complex gene 2); chlorophyll binding \| chr3:22756628-22758257 FORWARD
Arabidopsis thaliana annotation TAIR 9.0 (cDNA)20091022 on 11-DEC-09
E-val	simil.	overlap	accno	description
00e1	100	1008	GabiPD:AT2G34430.1 TAIR:AT2G34430.1	AT2G34430.1\|LHB1B1; chlorophyll binding (TAIR 9.0)
00e1	95.9	676	GabiPD:AT2G34420.1 TAIR:AT2G34420.1	AT2G34420.1\|LHB1B2; chlorophyll binding (TAIR 9.0)
00e1	90.5	676	GabiPD:AT1G29910.1 TAIR:AT1G29910.1	AT1G29910.1\|CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding (TAIR 9.0)
00e1	88.6	676	GabiPD:AT1G29920.1 TAIR:AT1G29920.1	AT1G29920.1\|CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2); chlorophyll binding (TAIR 9.0)
00e1	88.7	673	GabiPD:AT1G29930.1 TAIR:AT1G29930.1	AT1G29930.1\|CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding (TAIR 9.0)
UniGeneDec2009.fasta on 14-DEC-09
E-val	simil.	overlap	accno	description
00e1	100	1004	GabiPD:At.71449 unigene:At.71449	At.71449
00e1	89.4	824	GabiPD:Zm.81532 unigene:Zm.81532	Zm.81532
00e1	90.4	802	GabiPD:Bol.3992 unigene:Bol.3992	Bol.3992
00e1	90.3	802	GabiPD:Bra.5523 unigene:Bra.5523	Bra.5523
00e1	95.9	676	GabiPD:At.69621 unigene:At.69621	At.69621
00e1	90.5	676	GabiPD:At.48248 unigene:At.48248	At.48248
00e1	88.6	676	GabiPD:At.48249 unigene:At.48249	At.48249
00e1	91.6	675	GabiPD:At.66422 unigene:At.66422	At.66422
00e1	88.7	673	GabiPD:At.24351 unigene:At.24351	At.24351
00e1	92.1	672	GabiPD:Zm.82076 unigene:Zm.82076	Zm.82076
00e1	91.2	672	GabiPD:Bra.3018 unigene:Bra.3018	Bra.3018
00e1	91.2	672	GabiPD:Bra.280 unigene:Bra.280	Bra.280
00e1	88.5	670	GabiPD:Bol.3889 unigene:Bol.3889	Bol.3889
00e1	88.9	655	GabiPD:Bol.3844 unigene:Bol.3844	Bol.3844
UniProt 15.12 UniRef100 on 28-DEC-09
E-val	simil.	overlap	accno	description
01e-139	96	253	UniProt_UniRef:UniRef100_P04778	Chlorophyll a-b binding protein 2, chloroplastic n=2 Tax=Arabidopsis thaliana RepID=CB22_ARATH
01e-138	96	253	UniProt_UniRef:UniRef100_Q39141	Photosystem II type I chlorophyll a /b binding protein n=1 Tax=Arabidopsis thaliana RepID=Q39141_ARATH
01e-139	95.7	253	UniProt_UniRef:UniRef100_P04777	Chlorophyll a-b binding protein 165/180, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=CB21_ARATH
01e-138	95.3	253	UniProt_UniRef:UniRef100_Q8VZ87	Chlorophyll a/b-binding protein n=1 Tax=Arabidopsis thaliana RepID=Q8VZ87_ARATH
01e-138	94.9	253	UniProt_UniRef:UniRef100_Q153I7	Chloroplast chlorophyll a/b binding protein n=1 Tax=Brassica napus RepID=Q153I7_BRANA
01e-136	93.7	253	UniProt_UniRef:UniRef100_Q7Y1A1	Chlorophyll a/b binding protein n=1 Tax=Brassica oleracea RepID=Q7Y1A1_BRAOL
01e-145	100	252	UniProt_UniRef:UniRef100_Q39142	Photosystem II type I chlorophyll a /b binding protein n=1 Tax=Arabidopsis thaliana RepID=Q39142_ARATH
01e-145	99.6	252	UniProt_UniRef:UniRef100_Q8LCZ4	Putative photosystem II type I chlorophyll a b binding protein n=1 Tax=Arabidopsis thaliana RepID=Q8LCZ4_ARATH
01e-142	96.8	252	UniProt_UniRef:UniRef100_P13851	Chlorophyll a-b binding protein 1, chloroplastic n=1 Tax=Sinapis alba RepID=CB21_SINAL
01e-141	96.4	252	UniProt_UniRef:UniRef100_Q8W159	Chlorophyll a/b binding protein n=1 Tax=Brassica oleracea RepID=Q8W159_BRAOL

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